Evidence map›Paper›PMID 33718871›Full record

ArticleTherapeutic advances in gastrointestinal endoscopy

Training and deploying a deep learning model for endoscopic severity grading in ulcerative colitis using multicenter clinical trial data.

Benjamin Gutierrez Becker, Filippo Arcadu, Andreas Thalhammer, Citlalli Gamez Serna, Owen Feehan, Faye Drawnel, Young S Oh, Marco Prunotto

Open access · goldAbstract read
In one paragraph

Article in Therapeutic advances in gastrointestinal endoscopy. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 2 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 2 syntheses or guidelines pooled it, 60 citations in OpenAlex.

  1. Artificial intelligence in endoscopy related to inflammatory bowel disease: A systematic review.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2024
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  20. PHFBioengineering (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Benjamin Gutierrez BeckerRoche Pharma Research and Early Development Informatics, Roche Innovation Center Basel, Basel, Switzerland.ORCID https://orcid.org/0000-0002-5506-7785
Filippo ArcaduRoche Pharma Research and Early Development Informatics, Roche Innovation Center Basel, Basel, Switzerland.
Andreas ThalhammerRoche Pharma Research and Early Development Informatics, Roche Innovation Center Basel, Basel, Switzerland.ORCID https://orcid.org/0000-0002-0991-5771
Citlalli Gamez SernaRoche Pharma Research and Early Development Informatics, Roche Innovation Center Basel, Basel, Switzerland.
Owen FeehanRoche Pharma Research and Early Development Informatics, Roche Innovation Center Basel, Basel, Switzerland.
Faye DrawnelRoche Personalized Healthcare, Genentech, Inc., South San Francisco, CA, USA.
Young S OhProduct Development, Genentech, Inc., 1 DNA Way, South San Francisco, CA, USA.
Marco PrunottoSchool of Pharmaceutical Sciences, Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, Rue Michel-Servet 1, 1211 Geneva 4, Switzerland. Immunology, Infectious Disease & Ophthalmology, Roche, Basel, Switzerland.
Roche (Switzerland) · CHUniversity of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe Mayo Clinic Endoscopic Subscore is a commonly used grading system to assess the severity of ulcerative colitis. Correctly grading colonoscopies using the Mayo Clinic Endoscopic Subscore is a challenging task, with suboptimal rates of interrater and intrarater variability observed even among experienced and sufficiently trained experts. In recent years, several machine learning algorithms have been proposed in an effort to improve the standardization and reproducibility of Mayo Clinic Endoscopic Subscore grading.

methodsHere we propose an end-to-end fully automated system based on deep learning to predict a binary version of the Mayo Clinic Endoscopic Subscore directly from raw colonoscopy videos. Differently from previous studies, the proposed method mimics the assessment done in practice by a gastroenterologist, that is, traversing the whole colonoscopy video, identifying visually informative regions and computing an overall Mayo Clinic Endoscopic Subscore. The proposed deep learning-based system has been trained and deployed on raw colonoscopies using Mayo Clinic Endoscopic Subscore ground truth provided only at the colon section level, without manually selecting frames driving the severity scoring of ulcerative colitis. RESULTS AND

conclusionOur evaluation on 1672 endoscopic videos obtained from a multisite data set obtained from the etrolizumab Phase II Eucalyptus and Phase III Hickory and Laurel clinical trials, show that our proposed methodology can grade endoscopic videos with a high degree of accuracy and robustness (Area Under the Receiver Operating Characteristic Curve = 0.84 for Mayo Clinic Endoscopic Subscore ⩾ 1, 0.85 for Mayo Clinic Endoscopic Subscore ⩾ 2 and 0.85 for Mayo Clinic Endoscopic Subscore ⩾ 3) and reduced amounts of manual annotation. PLAIN LANGUAGE SUMMARY:

Indexed as

artificial intelligencedeep learningendoscopyinflammatory bowel diseaseulcerative colitis

Identifiers

PMID33718871
PMCPMC7917417
OpenAlexW3135769200

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.