ArticlePeerJ2021
Comparative transcriptome and flavonoids components analysis reveal the structural genes responsible for the yellow seed coat color of
Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 14 citations in OpenAlex.
- Seed coat transcriptomic profiling of 5-593, a genotype important for genetic studies of seed coat color and patterning in common bean (Phaseolus vulgaris L.).BMC plant biology · 2025Article
- Untargeted Metabolomics Analysis Reveals Differential Accumulation of Flavonoids Between Yellow-Seeded and Black-Seeded Rapeseed Varieties.Plants (Basel, Switzerland) · 2025Article
- Morphological, Physiological, and Molecular Responses to Heat Stress in Brassicaceae.Plants (Basel, Switzerland) · 2025Review
- Article
- Article
- Genome-wide identification and expression analysis of the anthocyanin-related genes during seed coat development in six Brassica species.BMC genomics · 2023Article
- Genome-wide identification of R2R3-MYB gene family and association with anthocyanin biosynthesis in Brassica species.BMC genomics · 2022Article
- Multi-omics analysis reveals the mechanism of seed coat color formation in Brassica rapa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Integrated transcriptome and metabolome profiling ofFrontiers in genetics · 2022Article
- Metabolite Profiling and Transcriptome Analysis Provide Insight into Seed Coat Color inInternational journal of molecular sciences · 2021Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSeed coat color is an important horticultural trait in
methodsComprehensive analysis of the abundance transcripts for seed coat color at three development stages by RNA-sequencing (RNA-seq) and corresponding flavonoids compounds by liquid chromatography-tandem mass spectrometry (LC-MS/MS) were carried out in
resultsWe identified 41,286 unigenes with 4,989 differentially expressed genes between brown seeds (B147) and yellow seeds (B80) at the same development stage. Kyoto Encyclopedia of Genes and Genomes enrichment analysis identified 19 unigenes associated with the phenylpropanoid, flavonoid, flavone and flavonol biosynthetic pathways as involved in seed coat color formation. Interestingly, expression levels of early biosynthetic genes (
conclusionsThe expression levels of flavonoid biosynthetic pathway genes and the relative content of flavonoid biosynthetic pathway metabolites clearly explained yellow seed color formation in
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