Evidence map›Paper›PMID 33713779›Full record

ArticleBioorganic & medicinal chemistry letters2021

A photoaffinity probe that targets folate-binding proteins.

Akihiro Takamura, Peter S Thuy-Boun, Seiya Kitamura, Zhen Han, Dennis W Wolan

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Akihiro TakamuraDepartments of Molecular Medicine and Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA; Biological Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga-gun, Tochigi 3213497, Japan.
Peter S Thuy-BounDepartments of Molecular Medicine and Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Seiya KitamuraDepartments of Molecular Medicine and Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Zhen HanDepartments of Molecular Medicine and Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Dennis W WolanDepartments of Molecular Medicine and Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA. Electronic address: wolan@scripps.edu.
Scripps Research Institute · US

Funding

A universal high-throughput platform to improve biological functions of small moleculesK99GM138758 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI KITAMURA, SEIYA · 2020 to 2021
$192k
NIGMS NIH HHS K99 GM138758
6 · The paper itself

Abstract

Folate and related derivatives are essential small molecules required for survival. Of significant interest is the biological role and necessity of folate in the crosstalk between commensal organisms and their respective hosts, including the tremendously complex human distal gut microbiome. Here, we designed a folate-based probe consisting of a photo-crosslinker to detect and quantitate folate-binding proteins from proteomic samples. We demonstrate the selectivity of our probe for the well-established human folate-binding protein dihydrofolate reductase and show no promiscuous labeling occurs with human caspase-3 or bovine serum albumin, which served as negative controls. Affinity-based enrichment of folate-binding proteins from an E. coli lysate in combination with mass spectrometry proteomics verified the ability of our probe to isolate low-abundance folate-dependent proteins. We envision that our probe will serve as a tool to elucidate the roles of commensal microbial folate-binding proteins in health and microbiome-related diseases.

Indexed as

Caspase 3Chromatography, High Pressure LiquidCross-Linking ReagentsEscherichia coliFolic AcidFolic Acid TransportersHumansMicrobiotaMolecular ProbesPhotochemical ProcessesProteomicsSerum Albumin, BovineTandem Mass SpectrometryTetrahydrofolate DehydrogenaseCaspase 3Cross-Linking ReagentsFolic AcidFolic Acid TransportersMolecular ProbesSerum Albumin, BovineTetrahydrofolate DehydrogenaseAffinity-based photo-activatable probeFolateFolic acidMass spectrometry protein profilingProteomics

Identifiers

PMID33713779
PMCPMC8096673
OpenAlexW3136108613

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.