Evidence map›Paper›PMID 33713347›Full record

ArticleJournal of phycology2021

Sterol Biosynthesis in Four Green Algae: A Bioinformatic Analysis of the Ergosterol Versus Phytosterol Decision Point.

Adam Voshall, Nakeirah T M Christie, Suzanne L Rose, Maya Khasin, James L Van Etten, Jennifer E Markham, Wayne R Riekhof, Kenneth W Nickerson

Open access · hybridAbstract read
In one paragraph

Article in Journal of phycology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Evolutionary formation of melatonin and vitamin D in early life forms: insects take centre stage.Biological reviews of the Cambridge Philosophical Society · 2024
    Review
  7. Stigmasterol: An Enigmatic Plant Stress Sterol with Versatile Functions.International journal of molecular sciences · 2024
    Review
  8. Article
  9. Microorganisms · 2024
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Adam VoshallDivision of Genetics and Genomics, Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, 02115, USA.ORCID 0000-0003-1606-4597
Nakeirah T M ChristieDepartment of Molecular Biophysics & Biochemistry, Yale University, New Haven, Connecticut, 06520, USA.
Suzanne L RoseSchool of Biological Sciences, University of Nebraska, Lincoln, Nebraska, 68588-0666, USA.
Maya KhasinWheat, Sorghum, and Forage Research Unit, USDA, Lincoln, Nebraska, 68583-0937, USA.
James L Van EttenDepartment of Plant Pathology, and Nebraska Center for Virology, University of Nebraska, Lincoln, Nebraska, 68583-0900, USA.
Jennifer E MarkhamDepartment of Biochemistry, and Center for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska, 68588-0664, USA.
Wayne R RiekhofSchool of Biological Sciences, University of Nebraska, Lincoln, Nebraska, 68588-0666, USA.
Kenneth W NickersonSchool of Biological Sciences, University of Nebraska, Lincoln, Nebraska, 68588-0666, USA.
University of Nebraska–Lincoln · USBoston Children's Hospital · USYale University · US

Funding

Mentored Patient-Oriented Research Career Development AwK23RR015535 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AFONJA, OLUBUMMI OLUTOYIN · 2000 to 2004
$657k
NCRR NIH HHS K23 RR015535
6 · The paper itself

Abstract

Animals and fungi produce cholesterol and ergosterol, respectively, while plants produce the phytosterols stigmasterol, campesterol, and β-sitosterol in various combinations. The recent sequencing of many algal genomes allows the detailed reconstruction of the sterol metabolic pathways. Here, we characterized sterol synthesis in two sequenced Chlorella spp., the free-living C. sorokiniana, and symbiotic C. variabilis NC64A. Chlamydomonas reinhardtii was included as an internal control and Coccomyxa subellipsoidea as a plant-like outlier. We found that ergosterol was the major sterol produced by Chlorella spp. and C. reinhardtii, while C. subellipsoidea produced the three phytosterols found in plants. In silico analysis of the C. variabilis NC64A, C. sorokiniana, and C. subellipsoidea genomes identified 22 homologs of sterol biosynthetic genes from Arabidopsis thaliana, Saccharomyces cerevisiae, and C. reinhardtii. The presence of CAS1, CPI1, and HYD1 in the four algal genomes suggests the higher plant cycloartenol branch for sterol biosynthesis, confirming that algae and fungi use different pathways for ergosterol synthesis. Phylogenetic analysis for 40 oxidosqualene cyclases (OSCs) showed that the nine algal OSCs clustered with the cycloartenol cyclases, rather than the lanosterol cyclases, with the OSC for C. subellipsoidea positioned in between the higher plants and the eight other algae. With regard to why C. subellipsoidea produced phytosterols instead of ergosterol, we identified 22 differentially conserved positions where C. subellipsoidea CAS and A. thaliana CAS1 have one amino acid while the three ergosterol producing algae have another. Together, these results emphasize the position of the unicellular algae as an evolutionary transition point for sterols.

Indexed as

ChlorellaPhytosterolsAnimalsComputational BiologyErgosterolPhylogenySterolsErgosterolPhytosterolsSterolsalgal sterol compositionChlorella sorokinianaChlorella variabilis NC64AClotrimazoleCoccomyxa subellipsoideaKetoconazoleoxidosqualene cyclaseterbinafine

Identifiers

PMID33713347
PMCPMC8453531
OpenAlexW3134588511

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.