Evidence map›Paper›PMID 33712898›Full record

ArticleImmunogenetics2021

The WC1 γδ T cell pathogen receptor of ruminants is preserved in the genome of ancient extinct auroch.

Kathleen Loonie, Alexandria Gillespie, Cynthia Baldwin

Abstract read
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Article in Immunogenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kathleen LoonieDepartment of Veterinary and Animal Sciences, Integrated Sciences Building, University of Massachusetts, 661 N. Pleasant St, Amherst, MA, 01003, USA.
Alexandria GillespieDepartment of Veterinary and Animal Sciences, Integrated Sciences Building, University of Massachusetts, 661 N. Pleasant St, Amherst, MA, 01003, USA.
Cynthia BaldwinDepartment of Veterinary and Animal Sciences, Integrated Sciences Building, University of Massachusetts, 661 N. Pleasant St, Amherst, MA, 01003, USA. cbaldwin@umass.edu.
University of Massachusetts Amherst · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The work reported here investigated the γδ T cell-specific cell surface receptor known as workshop cluster 1 (WC1) in the extinct Auroch and compared the gene sequences to those in modern cattle breeds. These molecules function as hybrid pattern recognition receptors (PRR), binders of microbial pathogens, and as signaling co-receptors of the T cell antigen receptor (TCR), directing the immune responses by γδ T cell subsets. Sequences in the Auroch genome included both WC1.1 and WC1.2-like a-patterned scavenger receptor cytsteine-rich (SRCR) domains as well as the more conserved b, c, d, and e-patterned SRCR domains. While there was much sequence homology with bovine WC1 genes, there are also unique Auroch genes based on the signature a1 SRCR domain sequences that are used to identify individual WC1 genes. There was also conservation of genes coding for Type I and II intracytoplasmic endodomains although no evidence for gene sequences for Type III endodomains or the extracellular 6 SRCR domains that are associated with this endodomain. This particular WC1 molecule has been proposed to represent the most ancient WC1, and thus, it is particularly interesting that it is apparently missing in the Auroch genome although it could be due to incomplete sequencing. Overall, the results suggest that while WC1 genes have been preserved from Ancient Auroch to modern cattle, they may have co-evolved perhaps as a result of differing pathogen or environmental antigen exposure.

Indexed as

AnimalsCattleExtinction, BiologicalGenomeMembrane GlycoproteinsProtein DomainsReceptors, Antigen, T-Cell, gamma-deltaRuminantsDMBT1 protein, Bos taurusMembrane GlycoproteinsReceptors, Antigen, T-Cell, gamma-deltaAurochBos primigeniusWC1Γδ T cells

Identifiers

PMID33712898
OpenAlexW3134816270

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.