Evidence map›Paper›PMID 33712569›Full record

ArticleNature communications2021

Structural and functional characterization of a putative de novo gene in Drosophila.

Andreas Lange, Prajal H Patel, Brennen Heames, Adam M Damry, Thorsten Saenger, Colin J Jackson, Geoffrey D Findlay, Erich Bornberg-Bauer

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Impact of GC content on de novo gene birth.Nature communications · 2026
    Article
  7. Article
  8. Review
  9. De Novo Genes: Current Status and Future Goals.Genome biology and evolution · 2025
    Article
  10. Expression of De Novo Open Reading Frames in Natural Populations of Drosophila melanogaster.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Article
  11. Recently Evolved, Stage-Specific Genes Are Enriched at Life-Stage Transitions in Flies.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. An orphan gene is essential for efficient sperm entry into eggs inbioRxiv : the preprint server for biology · 2024
    Article
  17. Article
  18. De Novo Genes.Annual review of genetics · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Andreas Lange *Institute for Evolution and Biodiversity, University of Münster, Münster, Germany.ORCID 0000-0003-3871-1986
Prajal H Patel *Department of Biology, College of the Holy Cross, Worcester, MA, USA.
Brennen HeamesInstitute for Evolution and Biodiversity, University of Münster, Münster, Germany.ORCID 0000-0001-7183-1483
Adam M DamryResearch School of Chemistry, ANU College of Science, Canberra, Australia.
Thorsten SaengerDepartment of Pediatric Kidney, Liver and Metabolic Diseases, Hannover Medical School, Hannover, Germany.
Colin J JacksonResearch School of Chemistry, ANU College of Science, Canberra, Australia.ORCID 0000-0001-6150-3822
Geoffrey D FindlayDepartment of Biology, College of the Holy Cross, Worcester, MA, USA. gfindlay@holycross.edu.ORCID 0000-0001-8052-2017
Erich Bornberg-BauerInstitute for Evolution and Biodiversity, University of Münster, Münster, Germany. ebb@wwu.de.

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
DROSOPHILA GENOMICS RESOURCE CENTERP40OD010949 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Andrew Zelhof · 2012 to 2026
$9.4M
NIH HHS P40 OD010949NIH HHS P40 OD018537
6 · The paper itself

Abstract

Comparative genomic studies have repeatedly shown that new protein-coding genes can emerge de novo from noncoding DNA. Still unknown is how and when the structures of encoded de novo proteins emerge and evolve. Combining biochemical, genetic and evolutionary analyses, we elucidate the function and structure of goddard, a gene which appears to have evolved de novo at least 50 million years ago within the Drosophila genus. Previous studies found that goddard is required for male fertility. Here, we show that Goddard protein localizes to elongating sperm axonemes and that in its absence, elongated spermatids fail to undergo individualization. Combining modelling, NMR and circular dichroism (CD) data, we show that Goddard protein contains a large central α-helix, but is otherwise partially disordered. We find similar results for Goddard's orthologs from divergent fly species and their reconstructed ancestral sequences. Accordingly, Goddard's structure appears to have been maintained with only minor changes over millions of years.

Indexed as

Evolution, MolecularAnimalsDrosophilaFertilityGene Expression Regulation, DevelopmentalGenomicsMaleMolecular Dynamics SimulationProteinsSpermatidsSpermatozoaTransgenesProteins

Identifiers

PMID33712569
PMCPMC7954818

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.