Evidence map›Paper›PMID 33712423›Full record

ArticleApplied and environmental microbiology2021

Detection of Rotavirus Vaccine Strains in Oysters and Sewage and Their Relationship with the Gastroenteritis Epidemic.

Erika Ito, Jian Pu, Takayuki Miura, Shinobu Kazama, Masateru Nishiyama, Hiroaki Ito, Yoshimitsu Konta, Tatsuo Omura, Toru Watanabe

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  9. Temporal variations of human and animalFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Erika ItoThe United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, Japan erika_ito@office.city.kobe.lg.jp to-ru@tds1.tr.yamagata-u.ac.jp.ORCID 0000-0002-0671-8705
Jian PuInstitute for Future Initiatives, The University of Tokyo, Tokyo, Japan.
Takayuki MiuraDepartment of Environmental Health, National Institute of Public Health, Wako, Saitama, Japan.
Shinobu KazamaDepartment of Urban Engineering, The University of Tokyo, Tokyo, Japan.
Masateru NishiyamaDepartment of Food, Life and Environmental Sciences, Yamagata University, Tsuruoka, Yamagata, Japan.
Hiroaki ItoCenter for Water Cycle, Marine Environment and Disaster Management, Kumamoto University, Kumamoto, Kumamoto, Japan.
Yoshimitsu KontaNew Industry Creation Hatchery Center, Tohoku University, Sendai, Miyagi, Japan.
Tatsuo OmuraNew Industry Creation Hatchery Center, Tohoku University, Sendai, Miyagi, Japan.
Toru WatanabeDepartment of Food, Life and Environmental Sciences, Yamagata University, Tsuruoka, Yamagata, Japan erika_ito@office.city.kobe.lg.jp to-ru@tds1.tr.yamagata-u.ac.jp.ORCID 0000-0002-3333-5443
The University of Tokyo · JPTohoku University · JPYamagata University · JPIwate University · JPKumamoto University · JPNational Institute of Public Health · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotavirus is one of the major causes of infectious gastroenteritis among infants and children, and live attenuated vaccines for rotavirus A (RVA), namely, Rotarix and RotaTeq, have recently become available in Japan. Rotavirus is known to be excreted from patients and accumulated in oysters similar to norovirus; however, the vaccine strains in aquatic environments or oysters have not yet been analyzed. In this study, we focused on wild-type RVA, which is highly important in considering the risk of infectious diseases. We quantified total RVA, Rotarix, and RotaTeq strains in oyster and sewage samples collected between September 2014 and July 2016 to assess the contamination levels of wild-type RVA by subtracting the quantitative value of rotavirus vaccine strains from that of total RVA. The positive rates of wild-type RVA, Rotarix, and RotaTeq in oysters were 54, 14, and 31%, respectively. These rates were comparable to those of wild-type RVA (57%) and RotaTeq (35%) in sewage; however, Rotarix was not detected in any sewage samples. The comparison of viral concentrations in oysters and sewage suggested more efficient accumulation of the vaccine strains in oysters than the wild-type RVA. The concentration of wild-type RVA in oysters was significantly correlated with that in sewage with a lag time of -6 to 0 weeks which is required for viral transportation from wastewater treatment plants to oysters. On the other hand, no significant correlation was observed between wild-type RVA concentration in sewage and the number of rotavirus-associated gastroenteritis cases, implying the existence of asymptomatic RVA-infected individuals.

Indexed as

AnimalsEnvironmental MonitoringEpidemicsGastroenteritisJapanOstreidaeRNA, ViralRotavirusRotavirus InfectionsRotavirus VaccinesSewageRNA, ViralRotavirus VaccinesSewagebioaccumulationoysterqPCRrotavirusvaccine

Identifiers

PMID33712423
PMCPMC8117762
OpenAlexW3135443165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.