Evidence map›Paper›PMID 33712189›Full record

ArticleMethods in enzymology2021

Preparation and utility of asymmetric lipid vesicles for studies of perfringolysin O-lipid interactions.

Shinako Kakuda, Bingchen Li, Erwin London

Abstract read
In one paragraph

Article in Methods in enzymology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shinako KakudaDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, United States.
Bingchen LiDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, United States.
Erwin LondonDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, United States. Electronic address: erwin.london@stonybrook.edu.

Funding

TRANSFORMATIVE LIPID EXCHANGE APPROACHES TO STUDY MEMBRANE ORGANIZATIONR35GM122493 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Erwin London · 2017 to 2026
$5.6M
NIGMS NIH HHS R35 GM122493
6 · The paper itself

Abstract

Studying the interaction of pore-forming toxins, including perfringolysin O (PFO), with lipid is crucial to understanding how they insert into membranes, assemble, and associate with membrane domains. In almost all past studies, symmetric lipid bilayers, i.e., bilayers having the same lipid composition in each monolayer (leaflet), have been used to study this process. However, practical methods to make asymmetric lipid vesicles have now been developed. These involve a cyclodextrin-catalyzed lipid exchange process in which the outer leaflet lipids are switched between two lipid vesicle populations with different lipid compositions. By use of alpha class cyclodextrins, it is practical to include a wide range of sterol concentrations in asymmetric vesicles. In this article, protocols for preparing asymmetric lipid vesicles are described, and to illustrate how they may be applied to studies of pore-forming toxin behavior, we summarize what has been learned about PFO conformation and its lipid interaction in symmetric and in asymmetric artificial lipid vesicles.

Indexed as

Bacterial ToxinsHemolysin ProteinsLipid BilayersSterolsBacterial ToxinsClostridium perfringens theta-toxinHemolysin ProteinsLipid BilayersSterolsHydroxypropyl alpha cyclodextrinLipid asymmetryLipid exchangeLiquid disorderedLiquid orderedMembrane protein insertionMethyl alpha cyclodextrinSterol

Identifiers

PMID33712189
PMCPMC8015688

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.