Evidence map›Paper›PMID 33711916›Full record

ArticleBMC genomics2021

Whole genome comparisons reveal panmixia among fall armyworm (Spodoptera frugiperda) from diverse locations.

Katrina A Schlum, Kurt Lamour, Caroline Placidi de Bortoli, Rahul Banerjee, Robert Meagher, Eliseu Pereira, Maria Gabriela Murua, Gregory A Sword, Ashley E Tessnow, Diego Viteri Dillon and 7 more

Abstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Katrina A SchlumGenome Science and Technology Graduate Program, University of Tennessee, Knoxville, TN, 37996, USA.
Kurt LamourDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, 37996, USA.
Caroline Placidi de BortoliDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, 37996, USA.
Rahul BanerjeeDepartment of Entomology and Plant Pathology, University of Tennessee, Knoxville, TN, 37996, USA.
Robert MeagherUSDA-ARS Center for Medical, Agricultural and Veterinary Entomology (CMAVE), Insect Behavior and Biocontrol Research Unit, Gainesville, FL, 32608, USA.
Eliseu PereiraDepartamento de Entomologia, Universidade Federal de Viçosa, Viçosa, MG, 36570, Brazil.
Maria Gabriela MuruaEstación Experimental Agroindustrial Obispo Colombres, T4101XAC, Las Talitas, Tucumán, Argentina.
Gregory A SwordDepartment of Entomology, Texas A&M University, College Station, TX, 77843, USA.
Ashley E TessnowDepartment of Entomology, Texas A&M University, College Station, TX, 77843, USA.
Diego Viteri DillonDepartment of Agro-Environmental Sciences, Isabel Research Substation, University of Puerto Rico, Isabela, PR, 00662, USA.
Angela M Linares RamirezDepartment of Agro-Environmental Sciences, Lajas Research Substation, University of Puerto Rico, Lajas, PR, 00667, USA.
Komivi S AkutseInternational Centre of Insect Physiology and Ecology, Nairobi, Kenya.
Rebecca Schmidt-JeffrisUSDA-ARS Temperate Fruit & Vegetable Research Unit, Wapato, WA, 98951, USA.
Fangneng HuangDepartment of Entomology, Louisiana State University Agricultural Center, Baton Rouge, LA, 70803, USA.
Dominic ReisigDepartment of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
Scott J EmrichGenome Science and Technology Graduate Program, University of Tennessee, Knoxville, TN, 37996, USA. semrich@utk.edu.
Juan Luis Jurat-FuentesGenome Science and Technology Graduate Program, University of Tennessee, Knoxville, TN, 37996, USA. jurat@utk.edu.ORCID http://orcid.org/0000-0002-8945-1814

Funding

National Institute of Food and Agriculture 2018-67013-27820
6 · The paper itself

Abstract

backgroundThe fall armyworm (Spodoptera frugiperda (J.E. Smith)) is a highly polyphagous agricultural pest with long-distance migratory behavior threatening food security worldwide. This pest has a host range of > 80 plant species, but two host strains are recognized based on their association with corn (C-strain) or rice and smaller grasses (R-strain). The population genomics of the United States (USA) fall armyworm remains poorly characterized to date despite its agricultural threat.

resultsIn this study, the population structure and genetic diversity in 55 S. frugiperda samples from Argentina, Brazil, Kenya, Puerto Rico and USA were surveyed to further our understanding of whole genome nuclear diversity. Comparisons at the genomic level suggest a panmictic S. frugiperda population, with only a minor reduction in gene flow between the two overwintering populations in the continental USA, also corresponding to distinct host strains at the mitochondrial level. Two maternal lines were detected from analysis of mitochondrial genomes. We found members from the Eastern Hemisphere interspersed within both continental USA overwintering subpopulations, suggesting multiple individuals were likely introduced to Africa.

conclusionsOur research is the largest diverse collection of United States S. frugiperda whole genome sequences characterized to date, covering eight continental states and a USA territory (Puerto Rico). The genomic resources presented provide foundational information to understand gene flow at the whole genome level among S. frugiperda populations. Based on the genomic similarities found between host strains and laboratory vs. field samples, our findings validate the experimental use of laboratory strains and the host strain differentiation based on mitochondria and sex-linked genetic markers extends to minor genome wide differences with some exceptions showing mixture between host strains is likely occurring in field populations.

Indexed as

Gene FlowZea maysAnimalsBrazilHumansKenyaSpodopteraCorn/rice host strainsFall armywormFstGenome wide diversityPanmixiaSpodoptera fruigperda

Identifiers

PMID33711916
PMCPMC7953542

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.