Evidence map›Paper›PMID 33711742›Full record

ArticleMedical image analysis2021

Predicting future cognitive decline with hyperbolic stochastic coding.

Jie Zhang, Qunxi Dong, Jie Shi, Qingyang Li, Cynthia M Stonnington, Boris A Gutman, Kewei Chen, Eric M Reiman, Richard J Caselli, Paul M Thompson and 2 more

Abstract read
In one paragraph

Article in Medical image analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jie ZhangSchool of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, 85287 USA.
Qunxi DongSchool of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, 85287 USA.
Jie ShiSchool of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, 85287 USA.
Qingyang LiSchool of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, 85287 USA.
Cynthia M StonningtonDepartment of Psychiatry and Psychology, Mayo Clinic Arizona, Scottsdale, AZ, USA.
Boris A GutmanArmour College of Engineering, Illinois Institute of Technology, Chicago, IL, USA.
Kewei ChenBanner Alzheimer's Institute, Phoenix, AZ, USA.
Eric M ReimanBanner Alzheimer's Institute, Phoenix, AZ, USA.
Richard J CaselliDepartment of Neurology, Mayo Clinic Arizona, Scottsdale, AZ, USA.
Paul M ThompsonImaging Genetics Center, Institute for Neuroimaging and Informatics, University of Southern California, Los Angeles, CA, USA.
Jieping YeDepartment of Computational Medicine and Bioinformatics & Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USA.
Yalin WangSchool of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, 85287 USA. Electronic address: ylwang@asu.edu.

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI REIMAN, ERIC MICHAEL · 2001 to 2020
$32.5M
Research Education ComponentP30AG072980 · NIA · BANNER HEALTH · PI Nicholas Ashton · 2021 to 2026
$24.9M
Ultrascale Machine Learning to Empower Discovery in Alzheimers Disease BiobanksU01AG068057 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Christos Davatzikos, Heng Huang · 2020 to 2026
$20.7M
PET, APOE & the Preclinical Course of Alzheimer's DiseaseR01AG031581 · NIA · BANNER ALZHEIMER'S INSTITUTE · PI CASELLI, RICHARD J., REIMAN, ERIC MICHAEL · 2008 to 2018
$16.6M
Training U54EB020403 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI THOMPSON, PAUL M · 2014 to 2018
$10.1M
SVRIII: Brain Connectome and Neurodevelopment OutcomesR01HL128818 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PANIGRAHY, ASHOK · 2015 to 2019
$3.5M
Multi-Source Sparse Learning to Identify MCI and Predict DeclineRF1AG051710 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THOMPSON, PAUL M, WANG, YALIN · 2016 to 2016
$2.8M
Predicting the early childhood outcomes of preterm brain shape abnormalitiesR01EB025032 · NIBIB · CHILDREN'S HOSPITAL OF LOS ANGELES · PI LEPORE, NATASHA · 2017 to 2020
$2.6M
Developing a Univariate Neurodegeneration Imaging Biomarker with Optimal TransportationR21AG065942 · NIA · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI WANG, YALIN · 2020 to 2020
$445k
CIHRNHLBI NIH HHS R01 HL128818NIA NIH HHS P30 AG019610NIA NIH HHS P30 AG072980NIA NIH HHS R01 AG031581NIA NIH HHS R21 AG065942NIA NIH HHS RF1 AG051710NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG068057NIBIB NIH HHS R01 EB025032NIBIB NIH HHS U54 EB020403
6 · The paper itself

Abstract

Hyperbolic geometry has been successfully applied in modeling brain cortical and subcortical surfaces with general topological structures. However, such approaches, similar to other surface-based brain morphology analysis methods, usually generate high dimensional features. It limits their statistical power in cognitive decline prediction research, especially in datasets with limited subject numbers. To address the above limitation, we propose a novel framework termed as hyperbolic stochastic coding (HSC). We first compute diffeomorphic maps between general topological surfaces by mapping them to a canonical hyperbolic parameter space with consistent boundary conditions and extracts critical shape features. Secondly, in the hyperbolic parameter space, we introduce a farthest point sampling with breadth-first search method to obtain ring-shaped patches. Thirdly, stochastic coordinate coding and max-pooling algorithms are adopted for feature dimension reduction. We further validate the proposed system by comparing its classification accuracy with some other methods on two brain imaging datasets for Alzheimer's disease (AD) progression studies. Our preliminary experimental results show that our algorithm achieves superior results on various classification tasks. Our work may enrich surface-based brain imaging research tools and potentially result in a diagnostic and prognostic indicator to be useful in individualized treatment strategies.

Indexed as

Alzheimer DiseaseCognitive DysfunctionAlgorithmsBrainHumansMagnetic Resonance ImagingAlzheimer’s disease (AD)ClassificationHyperbolic spaceRing-shaped patchesSparse coding

Identifiers

PMID33711742
PMCPMC8049149

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.