ArticlePloS one2021
Complete chloroplast genome features and phylogenetic analysis of Eruca sativa (Brassicaceae).
Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 61 citations in OpenAlex.
- A phylogenetic approach to prioritizing crop wild relatives in Brassiceae (Brassicaceae) for breeding applications.Annals of botany · 2026Article
- Chloroplast Phylogenomics and Evolutionary History of the Alpine EndemicInternational journal of molecular sciences · 2026Article
- Complete chloroplast genome features and phylogenetic analysis of Clematis cadmia.Scientific reports · 2026Article
- Phylogenomic and evolutionary analysis of arrowhead (iScience · 2026Article
- Insights into the plastome evolution and phylogenetic relationships of Lepidium (Brassicaceae).BMC plant biology · 2025Article
- Genome structure and molecular phylogeny of the only Eurasian Boechera species, Boechera falcata (Brassicaceae).G3 (Bethesda, Md.) · 2025Article
- Plastomic studies inform the mechanisms of edaphic adaptation in North American species in the tribe Thelypodieae (Brassicaceae).American journal of botany · 2025Article
- Mitochondrial genome ofFrontiers in plant science · 2025Article
- The chloroplast genome of Chrozophora sabulosa Kar. & Kir. and its exploration in the evolutionary position uncertainty of genus Chrozophora.BMC genomics · 2024Article
- Three complete chloroplast genomes from two north American Rhus species and phylogenomics of Anacardiaceae.BMC genomic data · 2024Article
- Characterization of the chloroplast genome of Gleditsia species and comparative analysis.Scientific reports · 2024Article
- Comparative Phylogenetic Analysis of Ancient Korean Tea "Hadong Cheon-Nyeon Cha (Current issues in molecular biology · 2024Article
- Genomic exploration of Sesuvium sesuvioides: comparative study and phylogenetic analysis within the order Caryophyllales from Cholistan desert, Pakistan.BMC plant biology · 2023Article
- Complete chloroplast genome sequences of the ornamental plant Prunus cistena and comparative and phylogenetic analyses with its closely related species.BMC genomics · 2023Article
- Indexing Resilience to Heat and Drought Stress in the Wild Relatives of Rapeseed-Mustard.Life (Basel, Switzerland) · 2023Article
- Phylogeny and adaptive evolution of subgenus Rhizirideum (Amaryllidaceae, Allium) based on plastid genomes.BMC plant biology · 2023Article
- Comparative analyses of Linderniaceae plastomes, with implications for its phylogeny and evolution.Frontiers in plant science · 2023Article
- Plastid Phylogenomic Analyses Reveal the Taxonomic Position ofPlants (Basel, Switzerland) · 2022Article
- The Complete Chloroplast Genome Sequence ofGenes · 2022Article
- Complete chloroplast genome sequence of Lens ervoides and comparison to Lens culinaris.Scientific reports · 2022Article
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Eruca sativa Mill. (Brassicaceae) is an important edible vegetable and a potential medicinal plant due to the antibacterial activity of its seed oil. Here, the complete chloroplast (cp) genome of E. sativa was de novo assembled with a combination of long PacBio reads and short Illumina reads. The E. sativa cp genome had a quadripartite structure that was 153,522 bp in size, consisting of one large single-copy region of 83,320 bp and one small single-copy region of 17,786 bp which were separated by two inverted repeat (IRa and IRb) regions of 26,208 bp. This complete cp genome harbored 113 unique genes: 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Forty-nine long repetitive sequences and 69 simple sequence repeats were identified in the E. sativa cp genome. A codon usage analysis of the E. sativa cp genome showed a bias toward codons ending in A/T. The E. sativa cp genome was similar in size, gene composition, and linearity of the structural region when compared with other Brassicaceae cp genomes. Moreover, the analysis of the synonymous (Ks) and non-synonymous (Ka) substitution rates demonstrated that protein-coding genes generally underwent purifying selection pressure, expect ycf1, ycf2, and rps12. A phylogenetic analysis determined that E. sativa is evolutionarily close to important Brassica species, indicating that it may be possible to transfer favorable E. sativa alleles into other Brassica species. Our results will be helpful to advance genetic improvement and breeding of E. sativa, and will provide valuable information for utilizing E. sativa as an important resource to improve other Brassica species.
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