Evidence map›Paper›PMID 33709700›Full record

ArticleBiochemistry2021

Protein Substrates Engage the Lumen of O-GlcNAc Transferase's Tetratricopeptide Repeat Domain in Different Ways.

Cassandra M Joiner, Forrest A Hammel, John Janetzko, Suzanne Walker

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Identification of a Polypeptide Inhibitor ofJournal of the American Chemical Society · 2024
    Article
  7. Review
  8. Dissecting OGT's TPR domain to identify determinants of cellular function.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Targeted Protein O-GlcNAcylation Using Bifunctional Small Molecules.Journal of the American Chemical Society · 2024
    Article
  10. OGT and OGA: Sweet guardians of the genome.The Journal of biological chemistry · 2024
    Review
  11. Article
  12. Article
  13. Phage display uncovers a sequence motif that drives polypeptide binding to a conserved regulatory exosite of O-GlcNAc transferase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Cassandra M JoinerDepartment of Microbiology, Harvard Medical School, 4 Blackfan Circle, Boston, Massachusetts 02115, United States.ORCID 0000-0003-0476-9418
Forrest A HammelDepartment of Microbiology, Harvard Medical School, 4 Blackfan Circle, Boston, Massachusetts 02115, United States.
John JanetzkoDepartment of Microbiology, Harvard Medical School, 4 Blackfan Circle, Boston, Massachusetts 02115, United States.ORCID 0000-0003-1604-2515
Suzanne WalkerDepartment of Microbiology, Harvard Medical School, 4 Blackfan Circle, Boston, Massachusetts 02115, United States.ORCID 0000-0002-0545-914X
Harvard University · US

Funding

Structure, Function and Inhibition of Human O-GlcNAc TransferaseR01GM094263 · NIGMS · HARVARD MEDICAL SCHOOL · PI WALKER, SUZANNE · 2012 to 2024
$5.8M
Principles of Scientific Citizenship: Ethics, Communication, and Leadership for ScientistsT32GM095450 · NIGMS · HARVARD UNIVERSITY · PI WALKER, SUZANNE · 2011 to 2020
$3.5M
Characterizing the O-GIcNAc Transferase Tetratricopeptide Repeat Domain's Role in Substrate SelectionF32GM129889 · NIGMS · HARVARD MEDICAL SCHOOL · PI JOINER, CASSANDRA MARIE · 2019 to 2019
$62k
NIGMS NIH HHS F32 GM129889NIGMS NIH HHS R01 GM094263NIGMS NIH HHS T32 GM095450
6 · The paper itself

Abstract

Glycosylation of nuclear and cytoplasmic proteins is an essential post-translational modification in mammals. O-GlcNAc transferase (OGT), the sole enzyme responsible for this modification, glycosylates more than 1000 unique nuclear and cytoplasmic substrates. How OGT selects its substrates is a fundamental question that must be answered to understand OGT's unusual biology. OGT contains a long tetratricopeptide repeat (TPR) domain that has been implicated in substrate selection, but there is almost no information about how changes to this domain affect glycosylation of individual substrates. By profiling O-GlcNAc in cell extracts and probing glycosylation of purified substrates, we show here that ladders of asparagines and aspartates that extend the full length of OGT's TPR lumen control substrate glycosylation. Different substrates are sensitive to changes in different regions of OGT's TPR lumen. We also found that substrates with glycosylation sites close to the C-terminus bypass lumenal binding. Our findings demonstrate that substrates can engage OGT in a variety of different ways for glycosylation.

Indexed as

N-AcetylglucosaminyltransferasesTetratricopeptide RepeatAnimalsGlycosylationHumansProtein Processing, Post-TranslationalSubstrate SpecificityN-AcetylglucosaminyltransferasesO-GlcNAc transferaseOGT protein, human

Identifiers

PMID33709700
PMCPMC8040631
OpenAlexW3134584173

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.