Evidence map›Paper›PMID 33709067›Full record

ArticleJAMIA open2021

Comparison and interpretability of machine learning models to predict severity of chest injury.

Sujay Kulshrestha, Dmitriy Dligach, Cara Joyce, Richard Gonzalez, Ann P O'Rourke, Joshua M Glazer, Anne Stey, Jacqueline M Kruser, Matthew M Churpek, Majid Afshar

Open access · goldAbstract read
In one paragraph

Article in JAMIA open, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Machine learning approaches for electronic health records phenotyping: a methodical review.Journal of the American Medical Informatics Association : JAMIA · 2023
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Sujay KulshresthaBurn and Shock Trauma Research Institute, Loyola University Chicago, Maywood, Illinois, USA.ORCID https://orcid.org/0000-0002-2074-4010
Dmitriy DligachCenter for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA.
Cara JoyceCenter for Health Outcomes and Informatics Research, Health Sciences Division, Loyola University Chicago, Maywood, Illinois, USA.
Richard GonzalezBurn and Shock Trauma Research Institute, Loyola University Chicago, Maywood, Illinois, USA.
Ann P O'RourkeDepartment of Surgery, University of Wisconsin, Madison, Wisconsin, USA.
Joshua M GlazerDepartment of Emergency Medicine, University of Wisconsin, Madison, Wisconsin, USA.
Anne SteyDepartment of Surgery, Northwestern University, Chicago, Illinois, USA.
Jacqueline M KruserDepartment of Medicine, University of Wisconsin, Madison, Wisconsin, USA.
Matthew M ChurpekDepartment of Medicine, University of Wisconsin, Madison, Wisconsin, USA.
Majid AfsharDepartment of Medicine, University of Wisconsin, Madison, Wisconsin, USA.
University of Wisconsin–Madison · USLoyola University Chicago · USLoyola University Medical Center · USNorthwestern University · US

Funding

Temporal relation discovery for clinical textR01LM010090 · NLM · BOSTON CHILDREN'S HOSPITAL · PI MARTIN, JAMES H., SAVOVA, GUERGANA K. · 2010 to 2022
$7.1M
Data Driven Strategies for Substance Misuse Identification in Hospitalized PatientsR01DA051464 · NIDA · UNIVERSITY OF WISCONSIN-MADISON · PI Majid Afshar · 2020 to 2026
$4.5M
Learning Universal Patient Representations with Hierarchical TransformersR01LM012973 · NLM · BOSTON CHILDREN'S HOSPITAL · PI Timothy A Miller · 2019 to 2026
$3.5M
Sepsis Early Prediction and Subphenotype Illumination Study (SEPSIS)R01GM123193 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CHURPEK, MATTHEW MICHAEL · 2017 to 2021
$1.9M
CHANGE OF GRANTEE INSTITUTION 1 K23 AA024503 Alcohol, Burn-Injury, and Acute Respiratory Distress SyndromeK23AA024503 · NIAAA · UNIVERSITY OF WISCONSIN-MADISON · PI AFSHAR, MAJID · 2016 to 2020
$948k
CHANGE OF GRANTEE INSTITUTION K23 HL146890 A Systems Approach to Align ICU Care with Patient Treatment GoalsK23HL146890 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI KRUSER, JACQUELINE MARIE · 2019 to 2023
$877k
NHLBI NIH HHS K23 HL146890NIAAA NIH HHS K23 AA024503NIDA NIH HHS R01 DA051464NIGMS NIH HHS R01 GM123193NLM NIH HHS R01 LM010090NLM NIH HHS R01 LM012973
6 · The paper itself

Abstract

objectiveTrauma quality improvement programs and registries improve care and outcomes for injured patients. Designated trauma centers calculate injury scores using dedicated trauma registrars; however, many injuries arrive at nontrauma centers, leaving a substantial amount of data uncaptured. We propose automated methods to identify severe chest injury using machine learning (ML) and natural language processing (NLP) methods from the electronic health record (EHR) for quality reporting. MATERIALS AND

methodsA level I trauma center was queried for patients presenting after injury between 2014 and 2018. Prediction modeling was performed to classify severe chest injury using a reference dataset labeled by certified registrars. Clinical documents from trauma encounters were processed into concept unique identifiers for inputs to ML models: logistic regression with elastic net (EN) regularization, extreme gradient boosted (XGB) machines, and convolutional neural networks (CNN). The optimal model was identified by examining predictive and face validity metrics using global explanations.

resultsOf 8952 encounters, 542 (6.1%) had a severe chest injury. CNN and EN had the highest discrimination, with an area under the receiver operating characteristic curve of 0.93 and calibration slopes between 0.88 and 0.97. CNN had better performance across risk thresholds with fewer discordant cases. Examination of global explanations demonstrated the CNN model had better face validity, with top features including "contusion of lung" and "hemopneumothorax." DISCUSSION: The CNN model featured optimal discrimination, calibration, and clinically relevant features selected.

conclusionNLP and ML methods to populate trauma registries for quality analyses are feasible.

Indexed as

interpretabilitymachine learningtrauma surgery

Identifiers

PMID33709067
PMCPMC7935500
OpenAlexW3135523653

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.