Evidence map›Paper›PMID 33709033›Full record

ArticleNeurology. Genetics2021

Polygenic Risk Scores Augment Stroke Subtyping.

Jiang Li, Durgesh P Chaudhary, Ayesha Khan, Christoph Griessenauer, David J Carey, Ramin Zand, Vida Abedi

Open access · goldAbstract read
In one paragraph

Article in Neurology. Genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. Pooled it
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  6. Article
  7. Article
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  10. Genetics in Ischemic Stroke: Current Perspectives and Future Directions.Journal of cardiovascular development and disease · 2023
    Review
  11. Article
  12. Significance tests for RAmerican journal of human genetics · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Jiang LiDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.ORCID 0000-0002-7006-1285
Durgesh P ChaudharyDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.
Ayesha KhanDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.
Christoph GriessenauerDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.
David J CareyDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.
Ramin ZandDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.
Vida AbediDepartment of Molecular and Functional Genomics (J.L., D.J.C., V.A.), Weis Center for Research, Geisinger Health System; Neuroscience Institute (D.P.C., A.K., C.G., R.Z.), Geisinger Health System, Danville, PA; Biocomplexity Institute (V.A.), Virginia Tech, Blacksburg, VA; and Research Institute of Neurointervention (C.G.), Paracelsus Medical University, Salzburg, Austria.
Paracelsus Medical University · AT

Funding

Electronic Health Record Data and Predictive Analytic Methods for HFR56HL116832 · NHLBI · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI YAN, XIAOWEI SHERRY · 2018 to 2018
$761k
NHLBI NIH HHS R56 HL116832
6 · The paper itself

Abstract

objectiveTo determine whether the polygenic risk score (PRS) derived from MEGASTROKE is associated with ischemic stroke (IS) and its subtypes in an independent tertiary health care system and to identify the PRS derived from gene sets of known biological pathways associated with IS.

methodsControls (n = 19,806/7,484, age ≥69/79 years) and cases (n = 1,184/951 for discovery/replication) of acute IS with European ancestry and clinical risk factors were identified by leveraging the Geisinger Electronic Health Record and chart review confirmation. All Geisinger MyCode patients with age ≥69/79 years and without any stroke-related diagnostic codes were included as low risk control. Genetic heritability and genetic correlation between Geisinger and MEGASTROKE (EUR) were calculated using the summary statistics of the genome-wide association study by linkage disequilibrium score regression. All PRS for any stroke (AS), any ischemic stroke (AIS), large artery stroke (LAS), cardioembolic stroke (CES), and small vessel stroke (SVS) were constructed by PRSice-2.

resultsA moderate heritability (10%-20%) for Geisinger sample as well as the genetic correlation between MEGASTROKE and the Geisinger cohort was identified. Variation of all 5 PRS significantly explained some of the phenotypic variations of Geisinger IS, and the

conclusionsWe provide the first evidence that PRSs derived from MEGASTROKE have value in identifying shared etiologies and determining stroke subtypes.

Identifiers

PMID33709033
PMCPMC7943221
OpenAlexW3134961486

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.