Evidence map›Paper›PMID 33708415›Full record

ArticleVirus evolution2021

Hepatitis delta virus-like circular RNAs from diverse metazoans encode conserved hammerhead ribozymes.

Marcos de la Peña, Raquel Ceprián, John L Casey, Amelia Cervera

Open access · goldAbstract read
In one paragraph

Article in Virus evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  5. Journal of virology · 2024
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  6. Review
  7. Article
  8. Article
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  11. Article
  12. The RNA virosphere: How big and diverse is it?Environmental microbiology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Viruses Defined by the Position of the Virosphere within the Replicator Space.Microbiology and molecular biology reviews : MMBR · 2021
    Article
  19. Article
  20. HDV-Like Viruses.Viruses · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Marcos de la PeñaIBMCP (CSIC-UPV), C/Ingeniero Fausto Elio s/n, Valencia 46022, Spain.
Raquel CepriánIBMCP (CSIC-UPV), C/Ingeniero Fausto Elio s/n, Valencia 46022, Spain.
John L CaseyDepartment of Microbiology and Immunology, Georgetown University Medical Center, Washington, DC, USA.
Amelia CerveraIBMCP (CSIC-UPV), C/Ingeniero Fausto Elio s/n, Valencia 46022, Spain.
Instituto de Biología Molecular y Celular de Plantas · ESGeorgetown University Medical Center · US

Funding

Inititation and elongation of HDV RNAsR21AI149049 · NIAID · GEORGETOWN UNIVERSITY · PI CASEY, JOHN L · 2020 to 2021
$417k
NIAID NIH HHS R21 AI149049
6 · The paper itself

Abstract

Human hepatitis delta virus (HDV) is a unique infectious agent whose genome is composed of a small circular RNA. Recent data, however, have reported the existence of highly divergent HDV-like circRNAs in the transcriptomes of diverse vertebrate and invertebrate species. The HDV-like genomes described in amniotes such as birds and reptiles encode self-cleaving RNA motifs or ribozymes similar to the ones present in the human HDV, whereas no catalytic RNA domains have been reported for the HDV-like genomes detected in metagenomic data from some amphibians, fish, and invertebrates. Herein, we describe the self-cleaving motifs of the HDV-like genomes reported in newts and fish, which belong to the characteristic class of HDV ribozymes. Surprisingly, HDV-like genomes from a toad and a termite show conserved type III hammerhead ribozymes, which belong to an unrelated class of catalytic RNAs characteristic of plant genomes and plant subviral circRNAs, such as some viral satellites and viroids. Sequence analyses revealed the presence of similar HDV-like hammerhead ribozymes encoded in two termite genomes, but also in the genomes of several dipteran species.

Indexed as

catalytic RNAcircRNAhepatitis delta virus

Identifiers

PMID33708415
PMCPMC7936874
OpenAlexW3130571154

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.