Evidence map›Paper›PMID 33708401›Full record

ArticleIUCrJ2021

Crystallographic models of SARS-CoV-2 3CL

Mariusz Jaskolski, Zbigniew Dauter, Ivan G Shabalin, Miroslaw Gilski, Dariusz Brzezinski, Marcin Kowiel, Bernhard Rupp, Alexander Wlodawer

Open access · goldAbstract read
In one paragraph

Article in IUCrJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  8. Towards a dependable data set of structures for L-asparaginase research.Acta crystallographica. Section D, Structural biology · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. SARS-CoV-2 3CLScience translational medicine · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A new inactive conformation of SARS-CoV-2 main protease.Acta crystallographica. Section D, Structural biology · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Mariusz JaskolskiDepartment of Crystallography, Faculty of Chemistry, A. Mickiewicz University, Poznan, Poland.ORCID https://orcid.org/0000-0003-1587-6489
Zbigniew DauterCenter for Structural Biology, National Cancer Institute, Frederick, MD 21702, USA.ORCID https://orcid.org/0000-0002-8806-9066
Ivan G ShabalinDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA 22908, USA.ORCID https://orcid.org/0000-0003-3955-9242
Miroslaw GilskiDepartment of Crystallography, Faculty of Chemistry, A. Mickiewicz University, Poznan, Poland.ORCID https://orcid.org/0000-0002-3941-9947
Dariusz BrzezinskiCenter for Biocrystallographic Research, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.ORCID https://orcid.org/0000-0001-9723-525X
Marcin KowielCenter for Biocrystallographic Research, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland.ORCID https://orcid.org/0000-0002-6269-3151
Bernhard Ruppk.-k Hofkristallamt, San Diego, CA 92084, USA.ORCID https://orcid.org/0000-0002-3300-6965
Alexander WlodawerCenter for Structural Biology, National Cancer Institute, Frederick, MD 21702, USA.ORCID https://orcid.org/0000-0002-5510-9703
Institute of Bioorganic Chemistry, Polish Academy of Sciences · PLNational Cancer Institute · USInnsbruck Medical University · ATUniversity of Virginia · US

Funding

Protein StructureZIABC010348 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WLODAWER, ALEXANDER · 2009 to 2025
$27.5M
Chimeric ACE2 peptide ligand for diagnostic assays of SARS-CoV-2ZIABC011966 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WLODAWER, ALEXANDER · 2020 to 2023
$825k
6 · The paper itself

Abstract

The appearance at the end of 2019 of the new SARS-CoV-2 coronavirus led to an unprecedented response by the structural biology community, resulting in the rapid determination of many hundreds of structures of proteins encoded by the virus. As part of an effort to analyze and, if necessary, remediate these structures as deposited in the Protein Data Bank (PDB), this work presents a detailed analysis of 81 crystal structures of the main protease 3CL

Indexed as

coronavirusCOVID-19ligand validationProtein Data BankreproducibilitySARS-CoV-2structure-guided drug discoveryviral proteases

Identifiers

PMID33708401
PMCPMC7924243
OpenAlexW3126562684

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.