Evidence map›Paper›PMID 33707782›Full record

ArticleNature chemical biology2021

Palmitoylated acyl protein thioesterase APT2 deforms membranes to extract substrate acyl chains.

Laurence Abrami, Martina Audagnotto, Sylvia Ho, Maria Jose Marcaida, Francisco S Mesquita, Muhammad U Anwar, Patrick A Sandoz, Giulia Fonti, Florence Pojer, Matteo Dal Peraro and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  3. Biochemistry · 2026
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  15. Palmitoylation in cardiovascular diseases: Molecular mechanism and therapeutic potential.International journal of cardiology. Heart & vasculature · 2025
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Laurence Abrami *Global Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-1774-0481
Martina Audagnotto *Institute of Bioengineering, School of Life Sciences, EPFL, Lausanne, Switzerland.
Sylvia HoGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-2969-7329
Maria Jose MarcaidaInstitute of Bioengineering, School of Life Sciences, EPFL, Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-0663-5309
Francisco S MesquitaGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.
Muhammad U AnwarGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.
Patrick A SandozGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-8379-7267
Giulia FontiInstitute of Bioengineering, School of Life Sciences, EPFL, Lausanne, Switzerland.
Florence PojerProtein Production and Structure Core Facility, School of Life Sciences, EPFL, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-9183-7206
Matteo Dal PeraroInstitute of Bioengineering, School of Life Sciences, EPFL, Lausanne, Switzerland. matteo.dalperaro@epfl.ch.
F Gisou van der GootGlobal Health Institute, School of Life Sciences, EPFL, Lausanne, Switzerland. gisou.vandergoot@epfl.ch.ORCID http://orcid.org/0000-0002-8522-274X
École Polytechnique Fédérale de Lausanne · CHScience for Life Laboratory · SE

Funding

European Research Council 340260Swiss National Science Foundation 176393Swiss National Science Foundation 192608
6 · The paper itself

Abstract

Many biochemical reactions require controlled recruitment of proteins to membranes. This is largely regulated by posttranslational modifications. A frequent one is S-acylation, which consists of the addition of acyl chains and can be reversed by poorly understood acyl protein thioesterases (APTs). Using a panel of computational and experimental approaches, we dissect the mode of action of the major cellular thioesterase APT2 (LYPLA2). We show that soluble APT2 is vulnerable to proteasomal degradation, from which membrane binding protects it. Interaction with membranes requires three consecutive steps: electrostatic attraction, insertion of a hydrophobic loop and S-acylation by the palmitoyltransferases ZDHHC3 or ZDHHC7. Once bound, APT2 is predicted to deform the lipid bilayer to extract the acyl chain bound to its substrate and capture it in a hydrophobic pocket to allow hydrolysis. This molecular understanding of APT2 paves the way to understand the dynamics of APT2-mediated deacylation of substrates throughout the endomembrane system.

Indexed as

AcylationCell MembraneHeLa CellsHumansLipoylationProtein Processing, Post-TranslationalProteinsProtein TransportSubstrate SpecificityThiolester HydrolasesLYPLA2 protein, humanProteinsThiolester Hydrolases

Identifiers

PMID33707782
PMCPMC7610442
OpenAlexW3135658592

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.