Evidence map›Paper›PMID 33693865›Full record

ArticleNucleic acids research2021

Oligomeric complexes formed by Redβ single strand annealing protein in its different DNA bound states.

Brian J Caldwell, Andrew Norris, Ekaterina Zakharova, Christopher E Smith, Carter T Wheat, Deepanshu Choudhary, Marcos Sotomayor, Vicki H Wysocki, Charles E Bell

Abstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. RedβNature communications · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Brian J CaldwellOhio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA.
Andrew NorrisDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Ekaterina ZakharovaDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH 43210, USA.
Christopher E SmithOhio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA.
Carter T WheatOhio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA.
Deepanshu ChoudharyDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA.
Marcos SotomayorOhio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA.
Vicki H WysockiOhio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA.
Charles E BellOhio State Biochemistry Program, The Ohio State University, Columbus, OH 43210, USA.

Funding

Waters Select Series Cyclic IMS for P41 Native MS Resource Application to Alzheimer's DiseaseP41GM128577 · NIGMS · OHIO STATE UNIVERSITY · PI SOMOGYI, ARPAD · 2018 to 2022
$7.6M
Cellular, molecular, and biochemical sciences training grantT32GM141955 · NIGMS · OHIO STATE UNIVERSITY · PI Jane Elizabeth Jackman, JESSE J KWIEK · 2021 to 2026
$2.2M
Molecular Biophysics predoctoral training at The Ohio State UniversityT32GM118291 · NIGMS · OHIO STATE UNIVERSITY · PI BUNDSCHUH, RALF A, KURET, JEFF · 2017 to 2021
$720k
NIGMS NIH HHS P41 GM128577NIGMS NIH HHS T32 GM118291NIGMS NIH HHS T32 GM141955
6 · The paper itself

Abstract

Redβ is a single strand annealing protein from bacteriophage λ that binds loosely to ssDNA, not at all to pre-formed dsDNA, but tightly to a duplex intermediate of annealing. As viewed by electron microscopy, Redβ forms oligomeric rings on ssDNA substrate, and helical filaments on the annealed duplex intermediate. However, it is not clear if these are the functional forms of the protein in vivo. We have used size-exclusion chromatography coupled with multi-angle light scattering, analytical ultracentrifugation and native mass spectrometry (nMS) to characterize the size of the oligomers formed by Redβ in its different DNA-bound states. The nMS data, which resolve species with the highest resolution, reveal that Redβ forms an oligomer of 12 subunits in the absence of DNA, complexes ranging from 4 to 14 subunits on 38-mer ssDNA, and a much more distinct and stable complex of 11 subunits on 38-mer annealed duplex. We also measure the concentration of Redβ in cells active for recombination and find it to range from 7 to 27 μM. Collectively, these data provide new insights into the dynamic nature of the complex on ssDNA, and the more stable and defined complex on annealed duplex.

Indexed as

Bacteriophage lambdaChromatography, GelDNADNA-Binding ProteinsDNA, Single-StrandedLightMass SpectrometryProtein BindingProtein MultimerizationScattering, RadiationUltracentrifugationViral ProteinsDNADNA-Binding ProteinsDNA, Single-StrandedViral Proteins

Identifiers

PMID33693865
PMCPMC8034648

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.