Evidence map›Paper›PMID 33693819›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2021

Identification of Dose-Dependent DNA Damage and Repair Responses From Subchronic Exposure to 1,4-Dioxane in Mice Using a Systems Analysis Approach.

Georgia Charkoftaki, Jaya Prakash Golla, Alvaro Santos-Neto, David J Orlicky, Rolando Garcia-Milian, Ying Chen, Nicholas J W Rattray, Yuping Cai, Yewei Wang, Colin T Shearn and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Mechanistic Considerations in 1,4-Dioxane Cancer Risk Assessment.Current opinion in environmental science & health · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Georgia CharkoftakiDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Jaya Prakash GollaDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.ORCID 0000-0002-5643-7987
Alvaro Santos-NetoDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
David J OrlickyDepartment of Pathology, School of Medicine, University of Colorado Anschutz Medical Center, University of Colorado, Aurora, Colorado, USA.
Rolando Garcia-MilianBioinformatics Support Program, Cushing/Whitney Medical Library, Yale School of Medicine, New Haven, Connecticut 06250, USA.
Ying ChenDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Nicholas J W RattrayDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Yuping CaiDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Yewei WangDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Colin T ShearnDepartment of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, Colorado 80045, USA.
Varvara MironovaDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Yensheng WangDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Caroline H JohnsonDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
David C ThompsonDepartment of Clinical Pharmacy, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado, Aurora, Colorado 80045, USA.
Vasilis VasiliouDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, New Haven, Connecticut 06250, USA.
Yale University · USUniversity of Colorado Anschutz Medical Campus · USUniversidade de São Paulo · BRUniversity of Strathclyde · GBWhitney Museum of American Art · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
SENSORS FOR WATER CONTAMINANT DETECTION AND MONITORINGP42ES033815 · NIEHS · YALE UNIVERSITY · PI Nicole Deziel · 2022 to 2026
$9.5M
Understanding sex differences in colon cancer metabolismR21CA223686 · NCI · YALE UNIVERSITY · PI JOHNSON, CAROLINE HELEN, KHAN, SAJID A · 2018 to 2019
$394k
NCATS NIH HHS UL1 TR001863NCI NIH HHS R21 CA223686NIEHS NIH HHS P42 ES033815
6 · The paper itself

Abstract

1,4-Dioxane (1,4-DX) is an environmental contaminant found in drinking water throughout the United States. Although it is a suspected liver carcinogen, there is no federal or state maximum contaminant level for 1,4-DX in drinking water. Very little is known about the mechanisms by which this chemical elicits liver carcinogenicity. In the present study, female BDF-1 mice were exposed to 1,4-DX (0, 50, 500, and 5,000mg/L) in their drinking water for 1 or 4 weeks, to explore the toxic effects. Histopathological studies and a multi-omics approach (transcriptomics and metabolomics) were performed to investigate potential mechanisms of toxicity. Immunohistochemical analysis of the liver revealed increased H2AXγ-positive hepatocytes (a marker of DNA double-strand breaks), and an expansion of precholangiocytes (reflecting both DNA damage and repair mechanisms) after exposure. Liver transcriptomics revealed 1,4-DX-induced perturbations in signaling pathways predicted to impact the oxidative stress response, detoxification, and DNA damage. Liver, kidney, feces, and urine metabolomic profiling revealed no effect of 1,4-DX exposure, and bile acid quantification in liver and feces similarly showed no effect of exposure. We speculate that the results may be reflective of DNA damage being counterbalanced by the repair response, with the net result being a null overall effect on the systemic biochemistry of the exposed mice. Our results show a novel approach for the investigation of environmental chemicals that do not elicit cell death but have activated the repair systems in response to 1,4-DX exposure.

Indexed as

DioxanesLiverAnimalsDNA DamageFemaleMiceSystems Analysis1,4-dioxaneDioxanes1,4-dioxaneDNA damagegene set enrichment analysishepatocellular carcinomahepatotoxicityliver transcriptomemetabolome

Identifiers

PMID33693819
PMCPMC8921626
OpenAlexW3134286197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.