Evidence map›Paper›PMID 33693750›Full record

ArticleThe Journal of infectious diseases2021

Gag p24 Is a Marker of Human Immunodeficiency Virus Expression in Tissues and Correlates With Immune Response.

Guoxin Wu, Paul Zuck, Shih Lin Goh, Jeffrey M Milush, Poonam Vohra, Joseph K Wong, Ma Somsouk, Steven A Yukl, Barbara L Shacklett, Nicolas Chomont and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 27 citations in OpenAlex.

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  13. GITR activationiScience · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 2 countries.

Guoxin WuMerck & Co, Inc, Kenilworth, New Jersey, USA.
Paul ZuckMerck & Co, Inc, Kenilworth, New Jersey, USA.
Shih Lin GohMerck & Co, Inc, Kenilworth, New Jersey, USA.
Jeffrey M MilushDivision of Experimental Medicine, University of California, San Francisco, San Francisco, California, USA.
Poonam VohraDivision of Pathology and Laboratory Medicine, University of California, San Francisco, San Francisco, California, USA.
Joseph K WongDivision of Infectious Diseases, Department of Medicine, San Francisco Veterans Affairs Health Care System and University of California, San Francisco, San Francisco, California, USA.
Ma SomsoukDivision of Gastroenterology, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California, San Francisco, San Francisco, California, USA.ORCID 0000-0001-6116-3645
Steven A YuklDivision of Infectious Diseases, Department of Medicine, San Francisco Veterans Affairs Health Care System and University of California, San Francisco, San Francisco, California, USA.
Barbara L ShacklettDepartment of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, Davis, California, USA.
Nicolas ChomontDepartment of Microbiology, Infectiology and Immunology and Centre de Recherche du CHUM, Université de Montréal, Montréal, Quebec, Canada.
Ashley T HaaseDepartment of Microbiology and Immunology, University of Minnesota Medical School, Minneapolis, Minnesota, USA.
Hiroyu HatanoDivision of HIV, ID, and Global Medicine, Department of Medicine, University of California, San Francisco, San Francisco, California, USA.
Timothy W SchackerDivision of Infectious Diseases, Department of Medicine, University of Minnesota, Minneapolis, Minnesota, USA.
Steven G DeeksDivision of HIV, ID, and Global Medicine, Department of Medicine, University of California, San Francisco, San Francisco, California, USA.
Daria J HazudaMerck & Co, Inc, Kenilworth, New Jersey, USA.
Peter W HuntDivision of Experimental Medicine, University of California, San Francisco, San Francisco, California, USA.
Bonnie J HowellMerck & Co, Inc, Kenilworth, New Jersey, USA.ORCID 0000-0002-5915-9943
University of California, San Francisco · USMerck & Co., Inc., Rahway, NJ, USA (United States) · USCentre Hospitalier de l’Université de Montréal · CASan Francisco General Hospital · USUniversity of California, Davis · USUniversity of Minnesota · USUniversity of Minnesota Medical Center · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETER W HUNT · 1988 to 2026
$93.6M
Ujima Mentoring ProgramP30MH062246 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 2001 to 2026
$57.4M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT, MCCUNE, JOSEPH M · 2011 to 2015
$29.5M
Delaney AIDS Research Enterprise to Cure HIVUM1AI126611 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT, PICKER, LOUIS J. · 2016 to 2020
$27.9M
HIV-Specific T Cell Responses in Rectal MucosaR01AI057020 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SHACKLETT, BARBARA L. · 2003 to 2016
$6.2M
Novel single genome approaches to determine the mechanisms of HIV latent infection in blood, gut, and lymph nodesR01DK120387 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LICHTERFELD, MATHIAS, YUKL, STEVEN A · 2019 to 2023
$4.1M
Investigating Mechanisms of HIV Persistence in the GutR01DK108349 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI YUKL, STEVEN A · 2015 to 2019
$2.2M
Understanding HIV latency reversal and clearance of infected cells in vivoR01AI132128 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K, YUKL, STEVEN A · 2017 to 2021
$1.9M
HIV-1 Adaptation in the Central Nervous SystemR01NS051132 · NINDS · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WONG, JOSEPH K · 2005 to 2009
$1.8M
The impact of early antiretroviral therapy on HIV persistence and inflammationR01AI087145 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2009 to 2010
$1.6M
BLRD VA I01 BX001048CSRD VA IK2 CX000520NCI NIH HHS K23 CA157929NCRR NIH HHS UL1 RR024131NIAID NIH HHS K23 AI075985NIAID NIH HHS K24 AI069994NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI057020NIAID NIH HHS R01 AI087145NIAID NIH HHS R01 AI132128NIAID NIH HHS R24 AI067039NIAID NIH HHS R56 AI091573NIAID NIH HHS U19 AI096109NIAID NIH HHS UM1 AI126611NIDDK NIH HHS R01 DK108349NIDDK NIH HHS R01 DK120387NIMH NIH HHS P30 MH062246NINDS NIH HHS R01 NS051132
6 · The paper itself

Abstract

We demonstrate that human immunodeficiency virus (HIV) gag p24 protein is more readily detected in gut and lymph node tissues than in blood CD4+ T cells and correlates better with CD4 count during antiretroviral therapy (ART). Gut p24 levels also measurably decline with ART in natural controllers. During ART, gut p24 expression is more strongly associated both with HIV-specific CD8+ T-cell frequency and plasma soluble CD14 levels than gut HIV RNA expression. This study supports using gag p24 as a marker of HIV expression in HIV+ tissues to study effects of viral persistence and to monitor efficacy of treatment in HIV-based clearance studies.

Indexed as

BiomarkersBiopsyCD4 Lymphocyte CountCD4-Positive T-LymphocytesFemalegag Gene Products, Human Immunodeficiency VirusHIV-1HIV Core Protein p24HIV InfectionsHumansLymphocyte ActivationBiomarkersgag Gene Products, Human Immunodeficiency VirusHIV Core Protein p24biomarkerfine needle aspiratesgag p24HIVHIV persistencelymph nodesrectal biopsy

Identifiers

PMID33693750
PMCPMC8599810
OpenAlexW3135669933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.