Evidence map›Paper›PMID 33692493›Full record

ArticleScientific reports2021

Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome.

Robert Moore, Bhanwar Lal Puniya, Robert Powers, Chittibabu Guda, Kenneth W Bayles, David B Berkowitz, Tomáš Helikar

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Robert Moore *Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Bhanwar Lal Puniya *Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Robert PowersDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Chittibabu GudaDepartment of Genetics, Cell Biology & Anatomy, University of Nebraska Medical Center, Omaha, NE, USA.
Kenneth W BaylesDepartment of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA.
David B BerkowitzDepartment of Chemistry, University of Nebraska-Lincoln, Lincoln, NE, USA.
Tomáš HelikarDepartment of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA. thelikar2@unl.edu.
University of Nebraska–Lincoln · USUniversity of Nebraska Medical Center · US

Funding

Software for collaborative construction, simulation, and analysis of mechanistic computational models of biological systemsR35GM119770 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI Tomas Helikar · 2016 to 2026
$4.4M
NIGMS NIH HHS R35 GM119770
6 · The paper itself

Abstract

Recent political unrest has highlighted the importance of understanding the short- and long-term effects of gamma-radiation exposure on human health and survivability. In this regard, effective treatment for acute radiation syndrome (ARS) is a necessity in cases of nuclear disasters. Here, we propose 20 therapeutic targets for ARS identified using a systematic approach that integrates gene coexpression networks obtained under radiation treatment in humans and mice, drug databases, disease-gene association, radiation-induced differential gene expression, and literature mining. By selecting gene targets with existing drugs, we identified potential candidates for drug repurposing. Eight of these genes (BRD4, NFKBIA, CDKN1A, TFPI, MMP9, CBR1, ZAP70, IDH3B) were confirmed through literature to have shown radioprotective effect upon perturbation. This study provided a new perspective for the treatment of ARS using systems-level gene associations integrated with multiple biological information. The identified genes might provide high confidence drug target candidates for potential drug repurposing for ARS.

Indexed as

Acute Radiation SyndromeDatabases, Nucleic AcidDrug Delivery SystemsGene Regulatory NetworksTranscription FactorsTranscriptomeAnimalsDrug RepositioningHumansMiceTranscription Factors

Identifiers

PMID33692493
PMCPMC7946886
OpenAlexW3135263259

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.