Evidence map›Paper›PMID 33692360›Full record

ArticleNature communications2021

Structural basis for VPS34 kinase activation by Rab1 and Rab5 on membranes.

Shirley Tremel, Yohei Ohashi, Dustin R Morado, Jessie Bertram, Olga Perisic, Laura T L Brandt, Marie-Kristin von Wrisberg, Zhuo A Chen, Sarah L Maslen, Oleksiy Kovtun and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
8.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. The Human Autophagy Core Complexes.Annual review of biochemistry · 2026
    Review
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  6. Article
  7. Review
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  11. Review
  12. Article
  13. Article
  14. Building bridges for autophagy.Nature structural & molecular biology · 2025
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Shirley TremelMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-4077-0021
Yohei OhashiMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-2288-130X
Dustin R MoradoMRC Laboratory of Molecular Biology, Cambridge, UK.
Jessie BertramMRC Laboratory of Molecular Biology, Cambridge, UK.
Olga PerisicMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-3842-2896
Laura T L BrandtMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0003-1830-4128
Marie-Kristin von WrisbergCenter for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Lab for Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, TUM-IAS, Garching, Germany.ORCID 0000-0002-7100-4565
Zhuo A ChenBioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany.ORCID 0000-0003-0811-8348
Sarah L MaslenMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-0261-2866
Oleksiy KovtunMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0001-6374-7863
Mark SkehelMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0002-2432-0901
Juri RappsilberBioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany.
Kathrin LangCenter for Integrated Protein Science Munich (CIPSM), Department of Chemistry, Lab for Synthetic Biochemistry, Technical University of Munich, Institute for Advanced Study, TUM-IAS, Garching, Germany.ORCID 0000-0002-1318-6567
Sean MunroMRC Laboratory of Molecular Biology, Cambridge, UK. sean@mrc-lmb.cam.ac.uk.ORCID 0000-0001-6160-5773
John A G BriggsMRC Laboratory of Molecular Biology, Cambridge, UK. jbriggs@mrc-lmb.cam.ac.uk.ORCID 0000-0003-3990-6910
Roger L WilliamsMRC Laboratory of Molecular Biology, Cambridge, UK. rlw@mrc-lmb.cam.ac.uk.ORCID 0000-0001-7754-4207
MRC Laboratory of Molecular Biology · GBCenter for Integrated Protein Science Munich · DEStockholm University · SETechnische Universität Berlin · DEWellcome Centre for Cell Biology · GB

Funding

Cancer Research UK C14801/A21211Medical Research Council MC_U10517878Medical Research Council MC_U105178783Medical Research Council MC_U105184308Medical Research Council MC_U105184326Medical Research Council MC_UP_1201/16Wellcome Trust 103139Wellcome Trust 203149
6 · The paper itself

Abstract

The lipid phosphatidylinositol-3-phosphate (PI3P) is a regulator of two fundamental but distinct cellular processes, endocytosis and autophagy, so its generation needs to be under precise temporal and spatial control. PI3P is generated by two complexes that both contain the lipid kinase VPS34: complex II on endosomes (VPS34/VPS15/Beclin 1/UVRAG), and complex I on autophagosomes (VPS34/VPS15/Beclin 1/ATG14L). The endosomal GTPase Rab5 binds complex II, but the mechanism of VPS34 activation by Rab5 has remained elusive, and no GTPase is known to bind complex I. Here we show that Rab5a-GTP recruits endocytic complex II to membranes and activates it by binding between the VPS34 C2 and VPS15 WD40 domains. Electron cryotomography of complex II on Rab5a-decorated vesicles shows that the VPS34 kinase domain is released from inhibition by VPS15 and hovers over the lipid bilayer, poised for catalysis. We also show that the GTPase Rab1a, which is known to be involved in autophagy, recruits and activates the autophagy-specific complex I, but not complex II. Both Rabs bind to the same VPS34 interface but in a manner unique for each. These findings reveal how VPS34 complexes are activated on membranes by specific Rab GTPases and how they are recruited to unique cellular locations.

Indexed as

Beclin-1Cell MembraneClass III Phosphatidylinositol 3-KinasesEndosomesHumansMembrane ProteinsProtein Structure, Secondaryrab1 GTP-Binding Proteinsrab5 GTP-Binding ProteinsTomographyTumor Suppressor ProteinsVacuolar Sorting Protein VPS15Beclin-1Class III Phosphatidylinositol 3-KinasesMembrane Proteinsrab1 GTP-Binding Proteinsrab5 GTP-Binding ProteinsTumor Suppressor ProteinsUVRAG protein, humanVacuolar Sorting Protein VPS15

Identifiers

PMID33692360
PMCPMC7946940
OpenAlexW3135116035

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.