Evidence map›Paper›PMID 33691009›Full record

ArticlePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing2021

Semantic Changepoint Detection for Finding Potentially Novel Research Publications.

Bhavish Dinakar, Mayla R Boguslav, Carsten Görg, Deendayal Dinakarpandian

Abstract read
In one paragraph

Article in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Bhavish DinakarDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, CA 94720, USA, bhavishdinakar@berkeley.edu.
Mayla R Boguslav
Carsten Görg
Deendayal Dinakarpandian

Funding

Scientific Questions: A New Target for Biomedical NLPR01LM013400 · NLM · UNIVERSITY OF COLORADO DENVER · PI BAUMGARTNER, WILLIAM ANTHONY · 2020 to 2023
$1.8M
NLM NIH HHS R01 LM013400
6 · The paper itself

Abstract

How has the focus of research papers on a given disease changed over time? Identifying the papers at the cusps of change can help highlight the emergence of a new topic or a change in the direction of research. We present a generally applicable unsupervised approach to this question based on semantic changepoints within a given collection of research papers. We illustrate the approach by a range of examples based on a nascent corpus of literature on COVID-19 as well as subsets of papers from PubMed on the World Health Organization list of neglected tropical diseases. The software is freely available at: https://github.com/pdddinakar/SemanticChangepointDetection.

Indexed as

COVID-19SemanticsComputational BiologyHumansPubMedSARS-CoV-2

Identifiers

PMID33691009
PMCPMC8352552

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.