Evidence map›Paper›PMID 33689684›Full record

ArticleCell chemical biology2021

A synthetic small molecule stalls pre-mRNA splicing by promoting an early-stage U2AF2-RNA complex.

Rakesh Chatrikhi, Callen F Feeney, Mary J Pulvino, Georgios Alachouzos, Andrew J MacRae, Zackary Falls, Sumit Rai, William W Brennessel, Jermaine L Jenkins, Matthew J Walter and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 37 citations in OpenAlex.

  1. The cellular landscape of druggable RNA-binding proteins.Nature reviews. Drug discovery · 2026
    Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. RNA Splicing as a Therapeutic Target in Cancer.Annual review of pharmacology and toxicology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Targeting RNA splicing modulation: new perspectives for anticancer strategy?Journal of experimental & clinical cancer research : CR · 2025
    Review
  12. Review
  13. Aberrant pre-mRNA processing in cancer.The Journal of experimental medicine · 2024
    Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Rakesh ChatrikhiDepartment of Biochemistry and Biophysics and Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14620, USA.
Callen F FeeneyDepartment of Biochemistry and Biophysics and Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14620, USA.
Mary J PulvinoDepartment of Biochemistry and Biophysics and Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14620, USA.
Georgios AlachouzosDepartment of Chemistry, University of Rochester, Rochester, NY 14627, USA.
Andrew J MacRaeDepartment of Molecular, Cell and Developmental Biology and Center for Molecular Biology of RNA, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Zackary FallsDepartment of Medical Informatics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY 14214, USA.
Sumit RaiMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA 02114, USA.
William W BrennesselDepartment of Chemistry, University of Rochester, Rochester, NY 14627, USA.
Jermaine L JenkinsDepartment of Biochemistry and Biophysics and Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14620, USA.
Matthew J WalterDepartment of Medicine, Washington University, St. Louis, MO 63110, USA.
Timothy A GraubertMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, MA 02114, USA.
Ram SamudralaDepartment of Medical Informatics, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY 14214, USA.
Melissa S JuricaDepartment of Molecular, Cell and Developmental Biology and Center for Molecular Biology of RNA, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Alison J FrontierDepartment of Chemistry, University of Rochester, Rochester, NY 14627, USA.
Clara L KielkopfDepartment of Biochemistry and Biophysics and Center for RNA Biology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14620, USA. Electronic address: clara_kielkopf@urmc.rochester.edu.
University of Rochester · USHarvard University · USUniversity at Buffalo, State University of New York · USUniversity of California, Santa Cruz · USUniversity of Rochester Medical Center · USWashington University in St. Louis · US

Funding

University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
Targeting the Bone Marrow Microenvironment In Acute Lymphocytic LeukemiaP50CA171963 · NCI · WASHINGTON UNIVERSITY · PI Daniel C Link · 2013 to 2026
$31.6M
Molecular Recognition During Pre-mRNA SplicingR01GM070503 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIELKOPF, CLARA · 2004 to 2025
$7.9M
National Library of Medicine Conference 2022T15LM012495 · NLM · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI PETER L. ELKIN · 2017 to 2026
$4.3M
Training Program/Molecular/Cell/Developmental BiologyT32GM008646 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STROME, SUSAN · 1999 to 2018
$3.7M
NOVEL PARADIGMS FOR DRUG DISCOVERY: COMPUTATIONAL MULTITARGET SCREENINGDP1LM011509 · NLM · UNIVERSITY OF WASHINGTON · PI SAMUDRALA, RAM · 2012 to 2014
$2.4M
Mechanisms of the spliceosome protein SF3B1 and inhibitorsR01GM122279 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI JURICA, MELISSA S · 2017 to 2020
$1.8M
NOVEL PARADIGMS FOR DRUG DISCOVERY: COMPUTATIONAL MULTITARGET SCREENINGDP1OD006779 · OD · UNIVERSITY OF WASHINGTON · PI SAMUDRALA, RAM · 2010 to 2011
$1.7M
Pain Medication Prescriptions and Misuse Following Treatment for Alcohol Use DisordersR21AA026954 · NIAAA · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI ELKIN, PETER L., LEONARD, KENNETH E · 2018 to 2019
$386k
BIAcore T100 for research and drug discovery in RochesterS10RR027241 · NCRR · UNIVERSITY OF ROCHESTER · PI KIELKOPF, CLARA · 2010 to 2010
$365k
NCATS NIH HHS UL1 TR001412NCI NIH HHS P50 CA171963NCRR NIH HHS S10 RR027241NIAAA NIH HHS R21 AA026954NIGMS NIH HHS R01 GM070503NIGMS NIH HHS R01 GM122279NIGMS NIH HHS T32 GM008646NIH HHS DP1 OD006779NLM NIH HHS DP1 LM011509NLM NIH HHS T15 LM012495
6 · The paper itself

Abstract

Dysregulated pre-mRNA splicing is an emerging Achilles heel of cancers and myelodysplasias. To expand the currently limited portfolio of small-molecule drug leads, we screened for chemical modulators of the U2AF complex, which nucleates spliceosome assembly and is mutated in myelodysplasias. A hit compound specifically enhances RNA binding by a U2AF2 subunit. Remarkably, the compound inhibits splicing of representative substrates and stalls spliceosome assembly at the stage of U2AF function. Computational docking, together with structure-guided mutagenesis, indicates that the compound bridges the tandem U2AF2 RNA recognition motifs via hydrophobic and electrostatic moieties. Cells expressing a cancer-associated U2AF1 mutant are preferentially killed by treatment with the compound. Altogether, our results highlight the potential of trapping early spliceosome assembly as an effective pharmacological means to manipulate pre-mRNA splicing. By extension, we suggest that stabilizing assembly intermediates may offer a useful approach for small-molecule inhibition of macromolecular machines.

Indexed as

FemaleHEK293 CellsHumansK562 CellsMolecular Docking SimulationMolecular StructureRNA, NeoplasmRNA PrecursorsRNA SplicingSmall Molecule LibrariesSplicing Factor U2AFRNA, NeoplasmRNA PrecursorsSmall Molecule LibrariesSplicing Factor U2AFU2AF2 protein, humanmyelodysplastic syndromeribonucleoprotein targetingS34F mutantspliceosome inhibitionsplicing factor mutationtherapeutic strategyU2AF1U2AF(35)U2AF(65)

Identifiers

PMID33689684
PMCPMC8380659
OpenAlexW3134520508

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.