Evidence map›Paper›PMID 33688982›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2021

Mapping and validating stem rust resistance genes directly in self-incompatible genetic resources of winter rye.

Paul Gruner, Anne-Kristin Schmitt, Kerstin Flath, Hans-Peter Piepho, Thomas Miedaner

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Paul GrunerState Plant Breeding Institute, University of Hohenheim, 70593, Stuttgart, Germany.ORCID https://orcid.org/0000-0002-0138-8495
Anne-Kristin SchmittInstitute for Plant Protection in Field Crops and Grassland, Julius-Kuehn Institute, Stahnsdorfer Damm 81, 14532, Kleinmachnow, Germany.
Kerstin FlathInstitute for Plant Protection in Field Crops and Grassland, Julius-Kuehn Institute, Stahnsdorfer Damm 81, 14532, Kleinmachnow, Germany.
Hans-Peter PiephoBiostatistics Unit, Institute of Crop Science, University of Hohenheim, 70593, Stuttgart, Germany.
Thomas MiedanerState Plant Breeding Institute, University of Hohenheim, 70593, Stuttgart, Germany. miedaner@uni-hohenheim.de.ORCID http://orcid.org/0000-0002-9541-3726
University of Hohenheim · DEJulius Kühn-Institut · DE

Funding

Bundesministerium für Wirtschaft und Technologie IGF-Nr.156 EN
6 · The paper itself

Abstract

key messageIndividual stem rust resistance genes could be directly mapped within self-incompatible rye populations. Genetic resources of rye (Secale cereale L.) are cross-pollinating populations that can be highly diverse and are naturally segregating. In this study, we show that this segregation could be used for mapping stem rust resistance. Populations of pre-selected donors from the Russian Federation, the USA and Austria were tested on a single-plant basis for stem rust resistance by a leaf-segment test with three rust isolates. Seventy-four plants per population were genotyped with a 10 K-SNP chip. Using cumulative logit models, significant associations between the ordinal infection score and the marker alleles could be found. Three different loci (Pgs1, Pgs2, Pgs3) in three populations were highly significant, and resistance-linked markers could be validated with field experiments of an independent seed sample from the original population and were used to fix two populations for resistance. We showed that it is possible to map monogenically inherited seedling resistance genes directly in genetic resources, thus providing a competitive alternative to linkage mapping approaches that require a tedious and time-consuming inbreeding over several generations.

Indexed as

Chromosome MappingAllelesBasidiomycotaDisease ResistanceGenetic LinkageGenotypePlant DiseasesPolymorphism, Single NucleotideSecale

Identifiers

PMID33688982
PMCPMC8263455
OpenAlexW3134945110

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.