Evidence map›Paper›PMID 33686914›Full record

ArticleEmerging microbes & infections2021

Viral evolution sustains a dengue outbreak of enhanced severity.

Catherine Inizan, Marine Minier, Matthieu Prot, Olivia O'Connor, Carole Forfait, Sylvie Laumond, Ingrid Marois, Antoine Biron, Ann-Claire Gourinat, Marie-Amélie Goujart and 5 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Emerging microbes & infections, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. The Effect of Increased Temperature on Dengue Virus in the VectorTropical medicine and infectious disease · 2026
    Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. [Dengue virus E protein-based luciferase immunosorbent assay for detecting dengue virus IgG antibody].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Catherine InizanURE Dengue and Arboviruses, Institut Pasteur in New Caledonia, Institut Pasteur International Network, Nouméa, New Caledonia.ORCID https://orcid.org/0000-0003-1933-1515
Marine MinierURE Dengue and Arboviruses, Institut Pasteur in New Caledonia, Institut Pasteur International Network, Nouméa, New Caledonia.
Matthieu ProtEvolutionary genomics of RNA viruses, Institut Pasteur, Paris, France.ORCID https://orcid.org/0000-0003-2337-2491
Olivia O'ConnorURE Dengue and Arboviruses, Institut Pasteur in New Caledonia, Institut Pasteur International Network, Nouméa, New Caledonia.ORCID https://orcid.org/0000-0002-8108-8408
Carole ForfaitHealth Authorities (DASS), Nouméa, New Caledonia.
Sylvie LaumondHealth Authorities (DASS), Nouméa, New Caledonia.
Ingrid MaroisInternal medicine and infectious diseases department, Territorial Hospital Center (CHT), Dumbéa, New Caledonia.
Antoine BironMicrobiology laboratory, Territorial Hospital Center (CHT), Dumbéa, New Caledonia.
Ann-Claire GourinatMicrobiology laboratory, Territorial Hospital Center (CHT), Dumbéa, New Caledonia.
Marie-Amélie GoujartMicrobiology laboratory, Territorial Hospital Center (CHT), Dumbéa, New Caledonia.
Elodie DesclouxInternal medicine and infectious diseases department, Territorial Hospital Center (CHT), Dumbéa, New Caledonia.
Anavaj SakuntabhaiFunctional genetics of infectious diseases Unit, Institut Pasteur, Paris, France.
Arnaud TarantolaURE Epidemiology, Institut Pasteur in New Caledonia, Institut Pasteur International Network, Nouméa, New Caledonia.ORCID https://orcid.org/0000-0002-6946-7958
Etienne Simon-LorièreEvolutionary genomics of RNA viruses, Institut Pasteur, Paris, France.ORCID https://orcid.org/0000-0001-8420-7743
Myrielle Dupont-RouzeyrolURE Dengue and Arboviruses, Institut Pasteur in New Caledonia, Institut Pasteur International Network, Nouméa, New Caledonia.ORCID https://orcid.org/0000-0002-6991-4893
Centre Hospitalier Territorial de Nouvelle-Calédonie · NCInstitut Pasteur de Nouvelle Calédonie · NCInstitut Pasteur · FRUniversity of New Caledonia · NCCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Compared to the previous 2013-2014 outbreak, dengue 2016-2017 outbreak in New Caledonia was characterized by an increased number of severe forms associated with hepatic presentations. In this study, we assessed the virological factors associated with this enhanced severity. Whole-genome sequences were retrieved from dengue virus (DENV)-1 strains collected in 2013-2014 and from severe and non-severe patients in 2016-2017. Fitness, hepatic tropism and cytopathogenicity of DENV 2016-2017 strains were compared to those of 2013-2014 strains using replication kinetics in the human hepatic cell line HuH7. Whole-genome sequencing identified four amino acid substitutions specific to 2016-2017 strains and absent from 2013-2014 strains. Three of these mutations occurred in predicted T cell epitopes, among which one was also a B cell epitope. Strains retrieved from severe forms did not exhibit specific genetic features. DENV strains from 2016-2017 exhibited a trend towards reduced replicative fitness and cytopathogenicity

Indexed as

Evolution, MolecularAmino Acid SubstitutionAnimalsCell LineDengueDengue VirusDisease OutbreaksGenetic VariationGenome, ViralGenotypeHepatitisHumansMutationNew CaledoniaPhylogenyRNA, ViralRNA, ViralhepatitisSevere dengueviral fitnesswhole-genome sequencing

Identifiers

PMID33686914
PMCPMC8011692
OpenAlexW3135395425

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.