Evidence map›Paper›PMID 33686424›Full record

ArticleThe Journal of heredity2021

Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice.

Jocelyn P Colella, Anna Tigano, Olga Dudchenko, Arina D Omer, Ruqayya Khan, Ivan D Bochkov, Erez L Aiden, Matthew D MacManes

Open access · hybridAbstract read
In one paragraph

Article in The Journal of heredity, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Jocelyn P ColellaDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH.
Anna TiganoDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH.
Olga DudchenkoCenter for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Arina D OmerCenter for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Ruqayya KhanCenter for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Ivan D BochkovCenter for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Erez L AidenCenter for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Matthew D MacManesDepartment of Molecular, Cellular, and Biomedical Sciences, University of New Hampshire, Durham, NH.ORCID 0000-0002-2368-6960
Baylor College of Medicine · USUniversity of New Hampshire · USThe University of Western Australia · AUUniversity of Kansas · US

Funding

Uncovering physiological and genomic mechanisms that enable dehydration tolerance in rodentsR35GM128843 · NIGMS · UNIVERSITY OF NEW HAMPSHIRE · PI MACMANES, MATTHEW DAVID · 2018 to 2025
$2.5M
NIGMS NIH HHS R35 GM128843
6 · The paper itself

Abstract

Warming climate and increasing desertification urge the identification of genes involved in heat and dehydration tolerance to better inform and target biodiversity conservation efforts. Comparisons among extant desert-adapted species can highlight parallel or convergent patterns of genome evolution through the identification of shared signatures of selection. We generate a chromosome-level genome assembly for the canyon mouse (Peromyscus crinitus) and test for a signature of parallel evolution by comparing signatures of selective sweeps across population-level genomic resequencing data from another congeneric desert specialist (Peromyscus eremicus) and a widely distributed habitat generalist (Peromyscus maniculatus), that may be locally adapted to arid conditions. We identify few shared candidate loci involved in desert adaptation and do not find support for a shared pattern of parallel evolution. Instead, we hypothesize divergent molecular mechanisms of desert adaptation among deer mice, potentially tied to species-specific historical demography, which may limit or enhance adaptation. We identify a number of candidate loci experiencing selective sweeps in the P. crinitus genome that are implicated in osmoregulation (Trypsin, Prostasin) and metabolic tuning (Kallikrein, eIF2-alpha kinase GCN2, APPL1/2), which may be important for accommodating hot and dry environmental conditions.

Indexed as

Adaptation, PhysiologicalPeromyscusAnimalsClimateGenomeSequence Analysis, DNAdehydrationdesertparallel evolutionPeromyscusthermoregulation

Identifiers

PMID33686424
PMCPMC8141686
OpenAlexW3135677211

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.