Evidence map›Paper›PMID 33684112›Full record

ArticlePLoS computational biology2021

Optimal prediction with resource constraints using the information bottleneck.

Vedant Sachdeva, Thierry Mora, Aleksandra M Walczak, Stephanie E Palmer

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. ChemotaxingbioRxiv : the preprint server for biology · 2025
    Article
  2. ChemotaxingArXiv · 2025
    Article
  3. Optimization in Visual Motion Estimation.Annual review of vision science · 2024
    Review
  4. Trade-offs between cost and information in cellular prediction.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Vedant SachdevaGraduate Program in Biophysical Sciences, University of Chicago, Chicago, Illinois, United States of America.
Thierry MoraLaboratoire de physique de l'École normale supérieure, Centre National de la Recherche Scientifique, Paris, France.ORCID 0000-0002-5456-9361
Aleksandra M WalczakLaboratoire de physique de l'École normale supérieure, Centre National de la Recherche Scientifique, Paris, France.ORCID 0000-0002-2686-5702
Stephanie E PalmerDepartment of Organismal Biology and Anatomy, University of Chicago, Chicago, Illinois, United States of America.ORCID 0000-0001-6211-6293

Funding

Graduate Program in Biophysical Sciences at the University of Chicago - Renewal 0T32EB009412 · NIBIB · UNIVERSITY OF CHICAGO · PI ENGEL, GREGORY S, SOSNICK, TOBIN R · 2009 to 2023
$4.9M
Coarse-graining approaches to networks, learning, and behaviorR01EB026943 · NIBIB · UNIVERSITY OF CHICAGO · PI BIALEK, WILLIAM, PALMER, STEPHANIE E · 2018 to 2020
$1.1M
NIBIB NIH HHS R01 EB026943NIBIB NIH HHS T32 EB009412
6 · The paper itself

Abstract

Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories.

Indexed as

Computational BiologyModels, BiologicalModels, StatisticalBiological EvolutionEnvironmentGene FrequencyGenetics, PopulationMovement

Identifiers

PMID33684112
PMCPMC7971903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.