Evidence map›Paper›PMID 33682371›Full record

ArticleArthritis & rheumatology (Hoboken, N.J.)2021

Dynamic Changes in the Nasal Microbiome Associated With Disease Activity in Patients With Granulomatosis With Polyangiitis.

Rennie L Rhee, Jiarui Lu, Kyle Bittinger, Jung-Jin Lee, Lisa M Mattei, Antoine G Sreih, Sherry Chou, Jonathan J Miner, Noam A Cohen, Brendan J Kelly and 4 more

Open access · greenAbstract read
In one paragraph

Article in Arthritis & rheumatology (Hoboken, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Characterizing the Cellular Constituents of Proximal Airway Disease in Granulomatosis With Polyangiitis.Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery · 2025
    Article
  3. Upper Respiratory Microbiome in Vasculitis.Rheumatic diseases clinics of North America · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Rennie L RheeUniversity of Pennsylvania, Philadelphia.ORCID 0000-0002-4907-0304
Jiarui LuUniversity of Pennsylvania, Philadelphia.
Kyle BittingerThe Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Jung-Jin LeeThe Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Lisa M MatteiThe Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Antoine G SreihUniversity of Pennsylvania, Philadelphia.
Sherry ChouUniversity of Pennsylvania, Philadelphia.
Jonathan J MinerWashington University School of Medicine, St. Louis, Missouri.ORCID 0000-0001-9551-2962
Noam A CohenUniversity of Pennsylvania, Philadelphia.
Brendan J KellyUniversity of Pennsylvania, Philadelphia.
Hongzhe LeeUniversity of Pennsylvania, Philadelphia.
Peter C GraysonNational Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland.ORCID 0000-0002-8269-9438
Ronald G CollmanUniversity of Pennsylvania, Philadelphia.
Peter A MerkelUniversity of Pennsylvania, Philadelphia.ORCID 0000-0001-9284-7345
University of Pennsylvania · USChildren's Hospital of Philadelphia · USNational Institute of Arthritis and Musculoskeletal and Skin Diseases · USWashington University in St. Louis · US

Funding

Mechanisms of STING-associated immunodeficiencyR01AI143982 · NIAID · WASHINGTON UNIVERSITY · PI Jonathan J Miner · 2019 to 2026
$4.6M
Nasal Microbiome and Host Immunity in Granulomatosis with PolyangiitisK23AR071514 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI RHEE, RENNIE · 2017 to 2022
$957k
Genetic and Functional Traits of Cultivated Nasal Bacteria in Relapsing Granulomatosis with PolyangiitisR03AR077697 · NIAMS · UNIVERSITY OF PENNSYLVANIA · PI RHEE, RENNIE · 2020 to 2022
$189k
NIAID NIH HHS R01 AI143982NIAMS NIH HHS K23 AR071514NIAMS NIH HHS R03 AR077697
6 · The paper itself

Abstract

objectiveLittle is known about temporal changes in nasal bacteria in granulomatosis with polyangiitis (GPA). This study was undertaken to examine longitudinal changes in the nasal microbiome in association with relapse in GPA patients.

methodsBacterial 16S ribosomal RNA gene sequencing was performed on nasal swabs from 19 patients with GPA who were followed up longitudinally for a total of 78 visits, including 9 patients who experienced a relapse and 10 patients who remained in remission. Relative abundance of bacteria and ratios between bacteria were examined. Generalized estimating equation models were used to evaluate the association between bacterial composition and 1) disease activity and 2) levels of antineutrophil cytoplasmic antibody (ANCA) with specificity for proteinase 3 (PR3), adjusted for medication.

resultsCorynebacterium and Staphylococcus were the most abundant bacterial genera across all nasal samples. Patients with quiescent disease maintained a stable ratio of Corynebacterium to Staphylococcus across visits. In contrast, in patients who experienced a relapse, a significantly lower ratio was observed at the visit prior to relapse, followed by a higher ratio at the time of relapse (adjusted P < 0.01). Species-level analysis identified an association between a higher abundance of nasal Corynebacterium tuberculostearicum and 1) relapse (adjusted P = 0.04) and 2) higher PR3-ANCA levels (adjusted P = 0.02).

conclusionIn GPA, significant changes occur in the nasal microbiome over time and are associated with disease activity. The occurrence of these changes months prior to the onset of relapse supports a pathogenic role of nasal bacteria in GPA. Our results uphold existing hypotheses implicating Staphylococcus as an instigator of disease and have generated a novel finding involving Corynebacterium as a potential mediator of disease in GPA.

Indexed as

MicrobiotaAdultCorynebacteriumFemaleGranulomatosis with PolyangiitisHumansMaleMiddle AgedNasal CavityStaphylococcus

Identifiers

PMID33682371
PMCPMC8403103
OpenAlexW3134801765

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.