Evidence map›Paper›PMID 33680362›Full record

ArticleComputational and structural biotechnology journal2021

Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family.

Vega Miguel-Ruano, Ivanna Rivera, Jelena Rajkovic, Kamila Knapik, Ana Torrado, José Manuel Otero, Elisa Beneventi, Manuel Becerra, Mercedes Sánchez-Costa, Aurelio Hidalgo and 5 more

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

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0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  4. Crystallization and preliminary X-ray crystallographic studies of AfeH from Acimetobacter sp. DL-2.Acta crystallographica. Section F, Structural biology communications · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Vega Miguel-RuanoDepartment of Crystallography and Structural Biology, Institute of Physical-Chemistry "Rocasolano", Spanish National Research Council (CSIC), Madrid, Spain.
Ivanna RiveraDepartment of Crystallography and Structural Biology, Institute of Physical-Chemistry "Rocasolano", Spanish National Research Council (CSIC), Madrid, Spain.
Jelena RajkovicBiochemistry Laboratory, CITACA-Agri-Food Research and Transfer Cluster, Campus Auga, University of Vigo, Ourense, Spain.
Kamila KnapikEXPRELA Group, University A Coruña, Science Faculty, Advanced Scientific Research Center (CICA), A Coruña, Spain.
Ana TorradoBiochemistry Laboratory, CITACA-Agri-Food Research and Transfer Cluster, Campus Auga, University of Vigo, Ourense, Spain.
José Manuel OteroGalChimia, S.A., Cebreiro, A Coruña, Spain.
Elisa BeneventiGalChimia, S.A., Cebreiro, A Coruña, Spain.
Manuel BecerraEXPRELA Group, University A Coruña, Science Faculty, Advanced Scientific Research Center (CICA), A Coruña, Spain.
Mercedes Sánchez-CostaDepartment of Molecular Biology, Center for Molecular Biology "Severo Ochoa" (UAM-CSIC), Autonomous University of Madrid, Madrid, Spain.
Aurelio HidalgoDepartment of Molecular Biology, Center for Molecular Biology "Severo Ochoa" (UAM-CSIC), Autonomous University of Madrid, Madrid, Spain.
José BerenguerDepartment of Molecular Biology, Center for Molecular Biology "Severo Ochoa" (UAM-CSIC), Autonomous University of Madrid, Madrid, Spain.
María-Isabel González-SisoEXPRELA Group, University A Coruña, Science Faculty, Advanced Scientific Research Center (CICA), A Coruña, Spain.
Jacobo CrucesGalChimia, S.A., Cebreiro, A Coruña, Spain.
María L RúaBiochemistry Laboratory, CITACA-Agri-Food Research and Transfer Cluster, Campus Auga, University of Vigo, Ourense, Spain.
Juan A HermosoDepartment of Crystallography and Structural Biology, Institute of Physical-Chemistry "Rocasolano", Spanish National Research Council (CSIC), Madrid, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel esterase, EstD11, has been discovered in a hot spring metagenomic library. It is a thermophilic and thermostable esterase with an optimum temperature of 60°C. A detailed substrate preference analysis of EstD11 was done using a library of chromogenic ester substrate that revealed the broad substrate specificity of EstD11 with significant measurable activity against 16 substrates with varied chain length, steric hindrance, aromaticity and flexibility of the linker between the carboxyl and the alcohol moiety of the ester. The tridimensional structures of EstD11 and the inactive mutant have been determined at atomic resolutions. Structural and bioinformatic analysis, confirm that EstD11 belongs to the family IV, the hormone-sensitive lipase (HSL) family, from the α/β-hydrolase superfamily. The canonical α/β-hydrolase domain is completed by a cap domain, composed by two subdomains that can unmask of the active site to allow the substrate to enter. Eight crystallographic complexes were solved with different substrates and reaction products that allowed identification of the hot-spots in the active site underlying the specificity of the protein. Crystallization and/or incubation of EstD11 at high temperature provided unique information on cap dynamics and a first glimpse of enzymatic activity

Indexed as

CHCA, cyclohexane carboxylic acidCMC, critical micellar concentrationCrystal structureCV, column volumeDMSO, dimethyl sulfoxideDSF, Differential scanning fluorimetryEnzyme-substrate complexFLU, fluoresceinHSL, hormone-sensitive lipaseLDAO, N,N-dimethyldodecylamine N-oxideMetagenomicMNP, methyl-naproxenNP, naproxenpNP, 4-nitrophenolPPL, Porcine Pancreatic LipaseThermophilic esteraseα/β hydrolase fold

Identifiers

PMID33680362
PMCPMC7905190

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.