Evidence map›Paper›PMID 33676928›Full record

ArticleJournal of molecular biology2021

Structure Basis for Shaping the Nse4 Protein by the Nse1 and Nse3 Dimer within the Smc5/6 Complex.

Aera Jo, Shibai Li, Jin Woo Shin, Xiaolan Zhao, Yunje Cho

Abstract read
In one paragraph

Article in Journal of molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Smc5/6 silences episomal transcription by a three-step function.Nature structural & molecular biology · 2022
    Article
  9. Cryo-EM structure of DNA-bound Smc5/6 reveals DNA clamping enabled by multi-subunit conformational changes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. SMC complexes: Lifting the lid on loop extrusion.Current opinion in cell biology · 2022
    Review
  11. Article
  12. In-Silico Functional Annotation ofFrontiers in genetics · 2022
    Article
  13. Article
  14. Integrative analysis reveals unique structural and functional features of the Smc5/6 complex.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Aera JoDepartment of Life Science, Pohang University of Science and Technology, Pohang, Republic of Korea.
Shibai LiMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Jin Woo ShinDepartment of Life Science, Pohang University of Science and Technology, Pohang, Republic of Korea.
Xiaolan ZhaoMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Yunje ChoDepartment of Life Science, Pohang University of Science and Technology, Pohang, Republic of Korea. Electronic address: yunje@postech.ac.kr.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
The Rtt107 interactome structures and functionsR01GM080670 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI ZHAO, XIAOLAN · 2007 to 2021
$4.5M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM080670
6 · The paper itself

Abstract

The Smc5/6 complex facilitates chromosome replication and DNA break repair. Within this complex, a subcomplex composed of Nse1, Nse3 and Nse4 is thought to play multiple roles through DNA binding and regulating ATP-dependent activities of the complex. However, how the Nse1-Nse3-Nse4 subcomplex carries out these multiple functions remain unclear. To address this question, we determine the crystal structure of the Xenopus laevis Nse1-Nse3-Nse4 subcomplex at 1.7 Å resolution and examine how it interacts with DNA. Our structural analyses show that the Nse1-Nse3 dimer adopts a closed conformation and forms three interfaces with a segment of Nse4, forcing it into a Z-shaped conformation. The Nse1-Nse3-Nse4 structure provides an explanation for how the lung disease immunodeficiency and chromosome breakage syndrome-causing mutations could dislodge Nse4 from Nse1-Nse3. Our DNA binding and mutational analyses reveal that the N-terminal and the middle region of Nse4 contribute to DNA interaction and cell viability. Integrating our data with previous crosslink mass spectrometry data, we propose potential roles of the Nse1-Nse3-Nse4 complex in binding DNA within the Smc5/6 complex.

Indexed as

Protein MultimerizationAmino Acid SequenceAnimalsChromosomal Proteins, Non-HistoneChromosome BreakageCrystallography, X-RayDNADNA-Binding ProteinsImmunologic Deficiency SyndromesLung DiseasesModels, MolecularMultiprotein ComplexesMutationProkaryotic CellsProtein ConformationProtein FoldingChromosomal Proteins, Non-HistoneDNADNA-Binding ProteinsMultiprotein ComplexesSmc5 protein, Xenopussmc6.1 protein, XenopusXenopus Proteinschromosome structureDNA replication and repairkleisin-KITE complexNse1-Nse3-Nse4the Smc5/6 complex

Identifiers

PMID33676928
PMCPMC8173833

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.