Evidence map›Paper›PMID 33676571›Full record

ArticleBiotechnology for biofuels2021

Physiological and transcriptional response to drought stress among bioenergy grass Miscanthus species.

Jose J De Vega, Abel Teshome, Manfred Klaas, Jim Grant, John Finnan, Susanne Barth

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

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  9. Development of energy plants from hybrids betweenFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jose J De Vega *Earlham Institute, Norwich Research Park, Norwich, NR4 7UZ, UK.
Abel Teshome *John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK.
Manfred KlaasTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland.
Jim GrantTeagasc Statistics and Applied Physics Research Operations Group, Ashtown, Dublin 15, D15 DY05, Ireland.
John FinnanTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland.
Susanne BarthTeagasc Crop Science Department, Oak Park, Carlow, R93XE12, Ireland. susanne.barth@teagasc.ie.ORCID http://orcid.org/0000-0002-4104-5964
Teagasc - The Irish Agriculture and Food Development Authority · IEJohn Innes Centre · GBNorwich Research Park · GB

Funding

FP7 International Cooperation FP7-KBBE-2011-5-289461
6 · The paper itself

Abstract

backgroundMiscanthus is a commercial lignocellulosic biomass crop owing to its high biomass productivity, resilience and photosynthetic capacity at low temperature. These qualities make Miscanthus a particularly good candidate for temperate marginal land, where yields can be limited by insufficient or excessive water supply. Differences in response to water stress have been observed among Miscanthus species, which correlated to origin. In this study, we compared the physiological and molecular responses among Miscanthus species under excessive (flooded) and insufficient (drought) water supply in glasshouse conditions.

resultsA significant biomass loss was observed under drought conditions in all genotypes. M. x giganteus showed a lower reduction in biomass yield under drought conditions compared to the control than the other species. Under flooded conditions, biomass yield was as good as or better than control conditions in all species. 4389 of the 67,789 genes (6.4%) in the reference genome were differentially expressed during drought among four Miscanthus genotypes from different species. We observed the same biological processes were regulated across Miscanthus species during drought stress despite the DEGs being not similar. Upregulated differentially expressed genes were significantly involved in sucrose and starch metabolism, redox, and water and glycerol homeostasis and channel activity. Multiple copies of the starch metabolic enzymes BAM and waxy GBSS-I were strongly up-regulated in drought stress in all Miscanthus genotypes, and 12 aquaporins (PIP1, PIP2 and NIP2) were also up-regulated in drought stress across genotypes.

conclusionsDifferent phenotypic responses were observed during drought stress among Miscanthus genotypes from different species, supporting differences in genetic adaption. The low number of DEGs and higher biomass yield in flooded conditions supported Miscanthus use in flooded land. The molecular processes regulated during drought were shared among Miscanthus species and consistent with functional categories known to be critical during drought stress in model organisms. However, differences in the regulated genes, likely associated with ploidy and heterosis, highlighted the value of exploring its diversity for breeding.

Indexed as

Differentially expressed genes (DEGs)DroughtElectrolyte leakageGene ontologyMiscanthusRelative water contentRNA-seq

Identifiers

PMID33676571
PMCPMC7937229
OpenAlexW3124878673

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.