Evidence map›Paper›PMID 33674876›Full record

ArticleMolecular biology and evolution2021

Identifying Primate ACE2 Variants That Confer Resistance to SARS-CoV-2.

Maloyjo Joyraj Bhattacharjee, Jinn-Jy Lin, Chih-Yao Chang, Yu-Ting Chiou, Tian-Neng Li, Chia-Wei Tai, Tz-Fan Shiu, Chi-An Chen, Chia-Yi Chou, Paromita Chakraborty and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Maloyjo Joyraj BhattacharjeeLife Science Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, India.
Jinn-Jy LinBiodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan.
Chih-Yao ChangBiodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan.
Yu-Ting ChiouInstitute of Molecular and Cellular Biology, National Tsing Hua University, Hsinchu, Taiwan.
Tian-Neng LiInstitute of Molecular and Cellular Biology, National Tsing Hua University, Hsinchu, Taiwan.
Chia-Wei TaiBiodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan.
Tz-Fan ShiuBiodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan.
Chi-An ChenBiodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan.
Chia-Yi ChouCenter for Molecular Medicine and Genetics, School of Medicine, Wayne State University, Detroit, MI, USA.
Paromita ChakrabortyDepartment of Biotechnology, Assam University, Silchar, Assam, India.
Yan Yuan TsengCenter for Molecular Medicine and Genetics, School of Medicine, Wayne State University, Detroit, MI, USA.
Lily Hui-Ching WangInstitute of Molecular and Cellular Biology, National Tsing Hua University, Hsinchu, Taiwan.
Wen-Hsiung LiBiodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan.
Biodiversity Research Center, Academia Sinica · TWNational Tsing Hua University · TWWayne State University · USAssam University · INInstitute of Advanced Study in Science and Technology · INNational Taiwan University · TWUniversity of Chicago · US

Funding

Analysis of Lipolytic Trafficking in Adipocytes.R01DK076629 · NIDDK · WAYNE STATE UNIVERSITY · PI James G Granneman, Christopher V Kelly · 2009 to 2026
$7.1M
Models and Algorithms for Biological Networks and Polymers: Stochastic Probability Landscape and Chromatin EnsemblesR35GM127084 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIANG, JIE · 2018 to 2025
$3.7M
Preclinical validation of ABHD5 as a target for treatment of obesity.R01DK105963 · NIDDK · WAYNE STATE UNIVERSITY · PI GRANNEMAN, JAMES G · 2015 to 2018
$2.7M
Database and Tools for Functional Inference and Mechanistic Insight into Somatic Cancer MutationsR01CA204962 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIANG, JIE, TSENG, YAN-YUAN · 2017 to 2019
$988k
NCI NIH HHS R01 CA204962NIDDK NIH HHS R01 DK076629NIDDK NIH HHS R01 DK105963NIGMS NIH HHS R35 GM127084
6 · The paper itself

Abstract

SARS-CoV-2 infects humans through the binding of viral S-protein (spike protein) to human angiotensin I converting enzyme 2 (ACE2). The structure of the ACE2-S-protein complex has been deciphered and we focused on the 27 ACE2 residues that bind to S-protein. From human sequence databases, we identified nine ACE2 variants at ACE2-S-protein binding sites. We used both experimental assays and protein structure analysis to evaluate the effect of each variant on the binding affinity of ACE2 to S-protein. We found one variant causing complete binding disruption, two and three variants, respectively, strongly and mildly reducing the binding affinity, and two variants strongly enhancing the binding affinity. We then collected the ACE2 gene sequences from 57 nonhuman primates. Among the 6 apes and 20 Old World monkeys (OWMs) studied, we found no new variants. In contrast, all 11 New World monkeys (NWMs) studied share four variants each causing a strong reduction in binding affinity, the Philippine tarsier also possesses three such variants, and 18 of the 19 prosimian species studied share one variant causing a strong reduction in binding affinity. Moreover, one OWM and three prosimian variants increased binding affinity by >50%. Based on these findings, we proposed that the common ancestor of primates was strongly resistant to and that of NWMs was completely resistant to SARS-CoV-2 and so is the Philippine tarsier, whereas apes and OWMs, like most humans, are susceptible. This study increases our understanding of the differences in susceptibility to SARS-CoV-2 infection among primates.

Indexed as

COVID-19Peptidyl-Dipeptidase ASARS-CoV-2AnimalsChlorocebus aethiopsDisease ResistanceHumansMacaca mulattaACE protein, humanPeptidyl-Dipeptidase AACE2: COVID-19resistant to SARS-CoV-2S-protein

Identifiers

PMID33674876
PMCPMC7989403
OpenAlexW3135510208

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.