Evidence map›Paper›PMID 33674772›Full record

ArticleCommunications biology2021

Engineering subtilisin proteases that specifically degrade active RAS.

Yingwei Chen, Eric A Toth, Biao Ruan, Eun Jung Choi, Richard Simmerman, Yihong Chen, Yanan He, Ruixue Wang, Raquel Godoy-Ruiz, Harlan King and 9 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Ionizable lipid nanoparticles for RAS protease delivery to inhibit cancer cell proliferation.Journal of controlled release : official journal of the Controlled Release Society · 2024
    Article
  7. Review
  8. RAS degraders: The new frontier for RAS-driven cancers.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

Yingwei ChenPotomac Affinity Proteins, North Potomac, MD, USA.
Eric A TothInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.ORCID 0000-0002-0766-5131
Biao RuanPotomac Affinity Proteins, North Potomac, MD, USA.
Eun Jung ChoiPotomac Affinity Proteins, North Potomac, MD, USA.
Richard SimmermanPotomac Affinity Proteins, North Potomac, MD, USA.
Yihong ChenInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
Yanan HeInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
Ruixue WangInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
Raquel Godoy-RuizInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
Harlan KingInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.ORCID 0000-0002-6438-8812
Gregory CusterInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.ORCID 0000-0002-9752-5748
D Travis GallagherInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
David A RozakUnified Culture Collection, United States Army Research Institute of Infectious Diseases, Fort Detrick, MD, USA.
Melani SolomonInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
Silvia MuroInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.
David J WeberInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA.ORCID 0000-0002-8824-1110
John OrbanInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA. jorban@umd.edu.
Thomas R FuerstInstitute for Bioscience and Biotechnology Research, Rockville, MD, USA. tfuerst@umd.edu.ORCID 0000-0002-9766-9995
Philip N BryanPotomac Affinity Proteins, North Potomac, MD, USA. pbryan@potomac-affinity-proteins.com.ORCID 0000-0001-7813-7523
Potomac Affinity Proteins (United States) · USInstitute for Bioscience and Biotechnology ResearchUniversity of Maryland, Baltimore · USNational Institute of Standards and Technology · USResearch Institute for Bioscience and Biotechnology · NPInstitute for Bioengineering of Catalonia · ESUnited States Army Medical Research Institute of Infectious Diseases · US

Funding

Structure and stability of 3_alpha vs alpha_beta foldsR01GM062154 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI BRYAN, PHILIP N, ORBAN, JOHN · 2002 to 2016
$3.2M
Engineering protein-specific proteases: targeting signaling proteinsR01GM141290 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI ORBAN, JOHN, TOTH, ERIC A · 2021 to 2024
$2.3M
Protease chain reactions for molecular analysis of cancer markersR44CA163403 · NCI · POTOMAC AFFINITY PROTEINS, LLC · PI RUAN, BIAO · 2013 to 2016
$1.8M
Fast, flexible, and economical system for affinity-tag protein purification and tag removalR44GM126676 · NIGMS · POTOMAC AFFINITY PROTEINS, LLC · PI BRYAN, PHILIP N · 2019 to 2020
$1.5M
Engineered proteases for proteomicsR44GM103389 · NIGMS · POTOMAC AFFINITY PROTEINS, LLC · PI RUAN, BIAO · 2012 to 2014
$1.1M
NCI NIH HHS R44 CA163403NIGMS NIH HHS R01 GM062154NIGMS NIH HHS R01 GM141290NIGMS NIH HHS R44 GM103389NIGMS NIH HHS R44 GM126676
6 · The paper itself

Abstract

We describe the design, kinetic properties, and structures of engineered subtilisin proteases that degrade the active form of RAS by cleaving a conserved sequence in switch 2. RAS is a signaling protein that, when mutated, drives a third of human cancers. To generate high specificity for the RAS target sequence, the active site was modified to be dependent on a cofactor (imidazole or nitrite) and protease sub-sites were engineered to create a linkage between substrate and cofactor binding. Selective proteolysis of active RAS arises from a 2-step process wherein sub-site interactions promote productive binding of the cofactor, enabling cleavage. Proteases engineered in this way specifically cleave active RAS in vitro, deplete the level of RAS in a bacterial reporter system, and also degrade RAS in human cell culture. Although these proteases target active RAS, the underlying design principles are fundamental and will be adaptable to many target proteins.

Indexed as

Protein EngineeringHEK293 CellsHumansKineticsMagnetic Resonance SpectroscopyModels, MolecularProteolysisProto-Oncogene Proteins p21(ras)Substrate SpecificitySubtilisinHRAS protein, humanProto-Oncogene Proteins p21(ras)Subtilisin

Identifiers

PMID33674772
PMCPMC7935941
OpenAlexW3134030193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.