Evidence map›Paper›PMID 33671255›Full record

ArticleBiomolecules2021

Multivalent Display of SARS-CoV-2 Spike (RBD Domain) of COVID-19 to Nanomaterial, Protein Ferritin Nanocages.

Umesh Kalathiya, Monikaben Padariya, Robin Fahraeus, Soumyananda Chakraborti, Ted R Hupp

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  7. Article
  8. Recombinant ferritins for multimodal nanomedicine.Journal of enzyme inhibition and medicinal chemistry · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
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  15. Article
  16. Article
  17. Review
  18. Article
  19. Biological Nanoparticles in Vaccine Development.Frontiers in bioengineering and biotechnology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Umesh KalathiyaUniversity of Gdansk, International Centre for Cancer Vaccine Science, ul. Kładki 24, 80-822 Gdansk, Poland.ORCID 0000-0001-7757-6962
Monikaben PadariyaUniversity of Gdansk, International Centre for Cancer Vaccine Science, ul. Kładki 24, 80-822 Gdansk, Poland.
Robin FahraeusUniversity of Gdansk, International Centre for Cancer Vaccine Science, ul. Kładki 24, 80-822 Gdansk, Poland.
Soumyananda ChakrabortiNational Institute of Malaria Research, Dwarka, New Delhi 110077, India.ORCID 0000-0002-7384-690X
Ted R HuppUniversity of Gdansk, International Centre for Cancer Vaccine Science, ul. Kładki 24, 80-822 Gdansk, Poland.ORCID 0000-0003-0391-0352
University of Gdańsk · PLNational Institute of Malaria Research · IN

Funding

Fundacja na rzecz Nauki Polskiej MAB/3/2017Narodowe Centrum Nauki 2020/36/C/NZ2/00108SC is supported by the Ramalingaswami Fellowship (BT/RLF/Re-entry/09/2019) received from the department of Biotechnology, India. BT/RLF/Re-entry/09/2019
6 · The paper itself

Abstract

SARS-CoV-2, or COVID-19, has a devastating effect on our society, both in terms of quality of life and death rates; hence, there is an urgent need for developing safe and effective therapeutics against SARS-CoV-2. The most promising strategy to fight against this deadly virus is to develop an effective vaccine. Internalization of SARS-CoV-2 into the human host cell mainly occurs through the binding of the coronavirus spike protein (a trimeric surface glycoprotein) to the human angiotensin-converting enzyme 2 (ACE2) receptor. The spike-ACE2 protein-protein interaction is mediated through the receptor-binding domain (RBD) of the spike protein. Mutations in the spike RBD can significantly alter interactions with the ACE2 host receptor. Due to its important role in virus transmission, the spike RBD is considered to be one of the key molecular targets for vaccine development. In this study, a spike RBD-based subunit vaccine was designed by utilizing a ferritin protein nanocage as a scaffold. Several fusion protein constructs were designed in silico by connecting the spike RBD via a synthetic linker (different sizes) to different ferritin subunits (H-ferritin and L-ferritin). The stability and the dynamics of the engineered nanocage constructs were tested by extensive molecular dynamics simulation (MDS). Based on our MDS analysis, a five amino acid-based short linker (S-Linker) was the most effective for displaying the spike RBD over the surface of ferritin. The behavior of the spike RBD binding regions from the designed chimeric nanocages with the ACE2 receptor was highlighted. These data propose an effective multivalent synthetic nanocage, which might form the basis for new vaccine therapeutics designed against viruses such as SARS-CoV-2.

Indexed as

Angiotensin-Converting Enzyme 2COVID-19COVID-19 VaccinesFerritinsHumansMolecular Dynamics SimulationNanostructuresProtein ConformationProtein DomainsProtein Interaction Domains and MotifsRecombinant Fusion ProteinsSARS-CoV-2Spike Glycoprotein, CoronavirusVaccines, SubunitACE2 protein, humanAngiotensin-Converting Enzyme 2COVID-19 VaccinesFerritinsRecombinant Fusion ProteinsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Vaccines, SubunitACE2COVID-19ferritin nanocagehydrogen bondsmolecular dynamic simulationprotein–protein interactionreceptor-binding domain (RBD)SARS-CoV-2spikevaccine

Identifiers

PMID33671255
PMCPMC7923090
OpenAlexW3132359518

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.