Evidence map›Paper›PMID 33670899›Full record

ArticleCells2021

Integrated Proteomic and Phosphoproteomics Analysis of DKK3 Signaling Reveals Activated Kinase in the Most Aggressive Gallbladder Cancer.

Kirti Gondkar, Gajanan Sathe, Neha Joshi, Bipin Nair, Akhilesh Pandey, Prashant Kumar

Open access · goldAbstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  3. [Progress in enrichment methods for proteinSe pu = Chinese journal of chromatography · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Kirti GondkarInstitute of Bioinformatics, International Tech Park, Bangalore 560066, India.ORCID 0000-0001-8605-3100
Gajanan SatheInstitute of Bioinformatics, International Tech Park, Bangalore 560066, India.
Neha JoshiInstitute of Bioinformatics, International Tech Park, Bangalore 560066, India.
Bipin NairAmrita School of Biotechnology, Amrita Vishwa Vidyapeetham, Kollam 690525, India.
Akhilesh PandeyCenter for Molecular Medicine, National Institute of Mental Health and Neurosciences (NIMHANS), Hosur Road, Bangalore 560029, India.
Prashant KumarInstitute of Bioinformatics, International Tech Park, Bangalore 560066, India.ORCID 0000-0001-8975-5108
Manipal Academy of Higher Education · INAmrita Vishwa Vidyapeetham · INInstitute of Bioinformatics · INMayo Clinic · US

Funding

Science and Engineering Research Board EMR/2015/002483Wellcome Trust
6 · The paper itself

Abstract

DKK3 is a secreted protein, which belongs to a family of Wnt antagonists and acts as a potential tumor suppressor in gallbladder cancer. To further understand its tumor suppressor functions, we overexpressed DKK3 in 3 GBC cell lines. We have employed high-resolution mass spectrometry and tandem mass tag (TMT) multiplexing technology along with immobilized metal affinity chromatography to enrich phosphopeptides to check the downstream regulators. In this study, we reported for the first time the alteration in the phosphorylation of 14 kinases upon DKK3 overexpression. In addition, we observed DKK3 induced hyper phosphorylation of 2 phosphatases: PPP1R12A and PTPRA, which have not been reported previously. Canonical pathway analysis of altered molecules indicated differential enrichment of signaling cascades upon DKK3 overexpression in all the 3 cell lines. Protein kinase A signaling, Sirtuin signaling pathway, and Cell Cycle Control of Chromosomal Replication were observed to be differentially activated in the GBC cell lines. Our study revealed, DKK3 overexpression has differential effect based on the aggressive behavior of the cell lines. This study expands the understanding of DKK3-mediated signaling events and can be used as a primary factor for understanding the complex nature of this molecule.

Indexed as

Adaptor Proteins, Signal TransducingGallbladder NeoplasmsHumansProteomicsSignal TransductionTransfectionAdaptor Proteins, Signal TransducingDKK3 protein, humandickkopf homologue 3GBCREICserine-threonine phospho-proteomics

Identifiers

PMID33670899
PMCPMC7997438
OpenAlexW3134600697

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.