Evidence map›Paper›PMID 33670053›Full record

ArticleEntropy (Basel, Switzerland)2021

Application of a Statistical and Linear Response Theory to Multi-Ion Na

William A T Gibby, Olena A Fedorenko, Carlo Guardiani, Miraslau L Barabash, Thomas Mumby, Stephen K Roberts, Dmitry G Luchinsky, Peter V E McClintock

Abstract read
In one paragraph

Article in Entropy (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

William A T GibbyDepartment of Physics, Lancaster University, Lancaster LA1 4YB, UK.
Olena A FedorenkoSchool of Life Sciences, University of Nottingham, Nottingham NG7 2UH, UK.
Carlo GuardianiDepartment of Physics, Lancaster University, Lancaster LA1 4YB, UK.ORCID 0000-0002-8914-9260
Miraslau L BarabashDepartment of Physics, Lancaster University, Lancaster LA1 4YB, UK.
Thomas MumbyDepartment of Physics, Lancaster University, Lancaster LA1 4YB, UK.
Stephen K RobertsDivision of Biomedical and Life Sciences, Lancaster University, Lancaster LA1 4YQ, UK.ORCID 0000-0003-1740-5330
Dmitry G LuchinskyDepartment of Physics, Lancaster University, Lancaster LA1 4YB, UK.
Peter V E McClintockDepartment of Physics, Lancaster University, Lancaster LA1 4YB, UK.ORCID 0000-0003-3375-045X

Funding

Engineering and Physical Sciences Research Council EP/M015831/1Engineering and Physical Sciences Research Council EP/M016889/1Leverhulme Trust RPG-2017-134
6 · The paper itself

Abstract

Biological ion channels are fundamental to maintaining life. In this manuscript we apply our recently developed statistical and linear response theory to investigate Na+ conduction through the prokaryotic Na+ channel NaChBac. This work is extended theoretically by the derivation of ionic conductivity and current in an electrochemical gradient, thus enabling us to compare to a range of whole-cell data sets performed on this channel. Furthermore, we also compare the magnitudes of the currents and populations at each binding site to previously published single-channel recordings and molecular dynamics simulations respectively. In doing so, we find excellent agreement between theory and data, with predicted energy barriers at each of the four binding sites of ∼4,2.9,3.6, and 4kT.

Indexed as

ion channelionic transportlinear responseNaChBacstatistical theory

Identifiers

PMID33670053
PMCPMC7926348

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.