Evidence map›Paper›PMID 33668850›Full record

ArticleGenes2021

Application of Genomics to Understand Salt Tolerance in Lentil.

Ruwani Dissanayake, Noel O I Cogan, Kevin F Smith, Sukhjiwan Kaur

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Ruwani DissanayakeAgriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC 3083, Australia.ORCID 0000-0003-1422-2117
Noel O I CoganAgriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC 3083, Australia.
Kevin F SmithFaculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC 3010, Australia.ORCID 0000-0001-6828-7480
Sukhjiwan KaurAgriculture Victoria, AgriBio, Centre for AgriBioscience, Bundoora, VIC 3083, Australia.
The University of Melbourne · AUAgriculture Victoria · AULa Trobe University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soil salinity is a major abiotic stress, limiting lentil productivity worldwide. Understanding the genetic basis of salt tolerance is vital to develop tolerant varieties. A diversity panel consisting of 276 lentil accessions was screened in a previous study through traditional and image-based approaches to quantify growth under salt stress. Genotyping was performed using two contrasting methods, targeted (tGBS) and transcriptome (GBS-t) genotyping-by-sequencing, to evaluate the most appropriate methodology. tGBS revealed the highest number of single-base variants (SNPs) (c. 56,349), and markers were more evenly distributed across the genome compared to GBS-t. A genome-wide association study (GWAS) was conducted using a mixed linear model. Significant marker-trait associations were observed on Chromosome 2 as well as Chromosome 4, and a range of candidate genes was identified from the reference genome, the most plausible being potassium transporters, which are known to be involved in salt tolerance in related species. Detailed mineral composition performed on salt-treated and control plant tissues revealed the salt tolerance mechanism in lentil, in which tolerant accessions do not transport Na

Indexed as

Quantitative Trait LociSalt ToleranceChromosome MappingChromosomes, PlantGene Expression ProfilingGene Expression Regulation, PlantGenome-Wide Association StudyGenomicsGenotyping TechniquesLens PlantPlant ProteinsPolymorphism, Single NucleotideSequence Analysis, DNAPlant Proteinsgenome-wide association studygenotyping-by-sequencinghaplotypesLens culinarislentillinkage disequilibriumpedigreesalt tolerancesalt tolerance mechanisms

Identifiers

PMID33668850
PMCPMC7996261
OpenAlexW3130261367

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.