Evidence map›Paper›PMID 33668646›Full record

ArticleCancers2021

Deep Learning Based HPV Status Prediction for Oropharyngeal Cancer Patients.

Daniel M Lang, Jan C Peeken, Stephanie E Combs, Jan J Wilkens, Stefan Bartzsch

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Daniel M LangInstitute of Radiation Medicine, Helmholtz Zentrum München, 85764 Munich, Germany.ORCID 0000-0003-0274-9069
Jan C PeekenInstitute of Radiation Medicine, Helmholtz Zentrum München, 85764 Munich, Germany.ORCID 0000-0003-2679-9853
Stephanie E CombsInstitute of Radiation Medicine, Helmholtz Zentrum München, 85764 Munich, Germany.ORCID 0000-0002-5233-1536
Jan J WilkensDepartment of Radiation Oncology, School of Medicine and Klinikum Rechts der Isar, Technical University of Munich (TUM), 81675 Munich, Germany.ORCID 0000-0002-1851-0581
Stefan BartzschInstitute of Radiation Medicine, Helmholtz Zentrum München, 85764 Munich, Germany.ORCID 0000-0001-9550-9122
TUM Klinikum · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infection with the human papillomavirus (HPV) has been identified as a major risk factor for oropharyngeal cancer (OPC). HPV-related OPCs have been shown to be more radiosensitive and to have a reduced risk for cancer related death. Hence, the histological determination of HPV status of cancer patients depicts an essential diagnostic factor. We investigated the ability of deep learning models for imaging based HPV status detection. To overcome the problem of small medical datasets, we used a transfer learning approach. A 3D convolutional network pre-trained on sports video clips was fine-tuned, such that full 3D information in the CT images could be exploited. The video pre-trained model was able to differentiate HPV-positive from HPV-negative cases, with an area under the receiver operating characteristic curve (AUC) of 0.81 for an external test set. In comparison to a 3D convolutional neural network (CNN) trained from scratch and a 2D architecture pre-trained on ImageNet, the video pre-trained model performed best. Deep learning models are capable of CT image-based HPV status determination. Video based pre-training has the ability to improve training for 3D medical data, but further studies are needed for verification.

Indexed as

deep learningHPV statusmachine learningoropharyngeal cancertransfer learning

Identifiers

PMID33668646
PMCPMC7917758
OpenAlexW3104843415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.