Evidence map›Paper›PMID 33667780›Full record

ArticleDrug and alcohol dependence2021

Epigenome-wide study of brain DNA methylation following acute opioid intoxication.

Chang Shu, David W Sosnowski, Ran Tao, Amy Deep-Soboslay, Joel E Kleinman, Thomas M Hyde, Andrew E Jaffe, Sarven Sabunciyan, Brion S Maher

Open access · greenAbstract read
In one paragraph

Article in Drug and alcohol dependence, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  7. Review
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  10. Within subject cross-tissue analyzes of epigenetic clocks in substance use disorder postmortem brain and blood.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2023
    Article
  11. Article
  12. Epigenetic Modulation of Opioid Receptors by Drugs of Abuse.International journal of molecular sciences · 2022
    Review
  13. Differential expression ofDrug and alcohol dependence reports · 2022
    Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chang ShuDepartment of Pediatrics, Columbia University Irving Medical Center, United States; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, United States.
David W SosnowskiDepartment of Mental Health, Johns Hopkins Bloomberg School of Public Health, United States. Electronic address: dsosnow1@jhu.edu.
Ran TaoLieber Institute for Brain Development, United States.
Amy Deep-SoboslayLieber Institute for Brain Development, United States.
Joel E KleinmanLieber Institute for Brain Development, United States; Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, United States.
Thomas M HydeLieber Institute for Brain Development, United States.
Andrew E JaffeDepartment of Mental Health, Johns Hopkins Bloomberg School of Public Health, United States; Lieber Institute for Brain Development, United States.
Sarven SabunciyanDepartment of Pediatrics, Johns Hopkins University, United States.
Brion S MaherDepartment of Mental Health, Johns Hopkins Bloomberg School of Public Health, United States.
Johns Hopkins University · USLieber Institute for Brain Development · US

Funding

NIDA Epidemiology Training Program: Johns Hopkins UniversityT32DA007292 · NIDA · JOHNS HOPKINS UNIVERSITY · PI RENEE M. JOHNSON, Brion S Maher · 1993 to 2026
$17.7M
Pharmacogenomics of ART adherence and effectiveness in the ALIVE CohortR01DA047064 · NIDA · JOHNS HOPKINS UNIVERSITY · PI KIRK, GREGORY D, MAHER, BRION S · 2018 to 2023
$5.8M
Functional Genomics and Epigenomics in HIV of Longitudinal Injection Drug Use TrajectoryR01DA039408 · NIDA · JOHNS HOPKINS UNIVERSITY · PI MAHER, BRION S · 2015 to 2019
$3.1M
An Examination of the Joint Contributions of Socioeconomic Disadvantage, Genetics, and COVID-19 on the Development of Delay Discounting and Substance Use Across AdolescenceR01DA057552 · NIDA · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI JULIA W FELTON, Brion S Maher · 2022 to 2026
$1.8M
NIDA NIH HHS R01 DA039408NIDA NIH HHS R01 DA047064NIDA NIH HHS R01 DA057552NIDA NIH HHS T32 DA007292
6 · The paper itself

Abstract

backgroundOpioid abuse poses significant risk to individuals in the United States and epigenetic changes are a leading potential biomarker of opioid abuse. Current evidence, however, is mostly limited to candidate gene analysis in whole blood. To clarify the association between opioid abuse and DNA methylation, we conducted an epigenome-wide analysis of DNA methylation in brain samples of individuals who died from acute opioid intoxication and group-matched controls.

methodsTissue samples were extracted from the dorsolateral prefrontal cortex of 153 deceased individuals (M

resultsAlthough no CpG sites survived false-discovery rate correction for multiple testing, 13 sites surpassed a relaxed significance threshold (p < 1.0 × 10

conclusionsNetrin-1 may be associated with opioid overdose, and future research with larger samples across stages of opioid use will elucidate the complex genomics of opioid abuse.

Indexed as

AdultAnalgesics, OpioidBiomarkersBrainDNA MethylationEpigenesis, GeneticEpigenomeFemaleGenome-Wide Association StudyHumansMaleMiddle AgedOpioid-Related DisordersAnalgesics, OpioidBiomarkersBrainDNA methylationEpigeneticOpioidPrefrontal cortex

Identifiers

PMID33667780
PMCPMC8026744
OpenAlexW3133778832

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.