Evidence map›Paper›PMID 33667394›Full record

ArticleAmerican journal of human genetics2021

Human ancient DNA analyses reveal the high burden of tuberculosis in Europeans over the last 2,000 years.

Gaspard Kerner, Guillaume Laval, Etienne Patin, Stéphanie Boisson-Dupuis, Laurent Abel, Jean-Laurent Casanova, Lluis Quintana-Murci

Open access · hybridAbstract readHistorical Article
In one paragraph

Article in American journal of human genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 100 citations in OpenAlex.

  1. Ancient DNA and Human Physiology.Physiology (Bethesda, Md.) · 2026
    Review
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  8. How Genomic and Structural Context Could Shape JAK-STAT Variant Pathogenicity.Twin research and human genetics : the official journal of the International Society for Twin Studies · 2026
    Article
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  15. Article
  16. Human LY9 governs CD4Science immunology · 2025
    Article
  17. Article
  18. The monogenic landscape of human infectious diseases.The Journal of allergy and clinical immunology · 2025
    Review
  19. Article
  20. The Microbe, the Infection Enigma, and the Host.Annual review of microbiology · 2024
    Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Gaspard KernerHuman Evolutionary Genetics Unit, Institut Pasteur, UMR2000, CNRS, 75015 Paris, France; Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM UMR 1163, Necker Hospital for Sick Children, 75015 Paris, France; Paris University, Imagine Institute, 75015 Paris, France. Electronic address: gakerner@pasteur.fr.
Guillaume LavalHuman Evolutionary Genetics Unit, Institut Pasteur, UMR2000, CNRS, 75015 Paris, France.
Etienne PatinHuman Evolutionary Genetics Unit, Institut Pasteur, UMR2000, CNRS, 75015 Paris, France.
Stéphanie Boisson-DupuisLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM UMR 1163, Necker Hospital for Sick Children, 75015 Paris, France; Paris University, Imagine Institute, 75015 Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY 10065, USA.
Laurent AbelLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM UMR 1163, Necker Hospital for Sick Children, 75015 Paris, France; Paris University, Imagine Institute, 75015 Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY 10065, USA.
Jean-Laurent CasanovaLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM UMR 1163, Necker Hospital for Sick Children, 75015 Paris, France; Paris University, Imagine Institute, 75015 Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, Rockefeller University, New York, NY 10065, USA; Howard Hughes Medical Institute, New York, NY 10065, USA.
Lluis Quintana-MurciHuman Evolutionary Genetics Unit, Institut Pasteur, UMR2000, CNRS, 75015 Paris, France; Chair of Human Genomics and Evolution, Collège de France, 75005 Paris, France. Electronic address: quintana@pasteur.fr.
Centre National de la Recherche Scientifique · FRInserm · FRInstitut des Maladies Génétiques Imagine · FRInstitut Pasteur · FR

Funding

Monogenic basis of resistance to SARS-CoV2 and predisposition to severe COVID-19R01AI088364 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Jean-Laurent Casanova, Shen-Ying Zhang · 2010 to 2026
$8.7M
NIAID NIH HHS R01 AI088364
6 · The paper itself

Abstract

Tuberculosis (TB), usually caused by Mycobacterium tuberculosis bacteria, is the first cause of death from an infectious disease at the worldwide scale, yet the mode and tempo of TB pressure on humans remain unknown. The recent discovery that homozygotes for the P1104A polymorphism of TYK2 are at higher risk to develop clinical forms of TB provided the first evidence of a common, monogenic predisposition to TB, offering a unique opportunity to inform on human co-evolution with a deadly pathogen. Here, we investigate the history of human exposure to TB by determining the evolutionary trajectory of the TYK2 P1104A variant in Europe, where TB is considered to be the deadliest documented infectious disease. Leveraging a large dataset of 1,013 ancient human genomes and using an approximate Bayesian computation approach, we find that the P1104A variant originated in the common ancestors of West Eurasians ∼30,000 years ago. Furthermore, we show that, following large-scale population movements of Anatolian Neolithic farmers and Eurasian steppe herders into Europe, P1104A has markedly fluctuated in frequency over the last 10,000 years of European history, with a dramatic decrease in frequency after the Bronze Age. Our analyses indicate that such a frequency drop is attributable to strong negative selection starting ∼2,000 years ago, with a relative fitness reduction on homozygotes of 20%, among the highest in the human genome. Together, our results provide genetic evidence that TB has imposed a heavy burden on European health over the last two millennia.

Indexed as

Body RemainsDNA, AncientEuropeFemaleGenome, HumanHistory, AncientHumansMalePolymorphism, GeneticTuberculosisTYK2 KinaseDNA, AncientTYK2 KinaseTYK2 protein, humanancient DNAApproximate Bayesian ComputationdiseaseEuropeansevolutiongeneticshumanMycobacterium tuberculosisnatural selectiontuberculosis

Identifiers

PMID33667394
PMCPMC8008489
OpenAlexW3134738901

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.