Evidence map›Paper›PMID 33664264›Full record

ArticleNature communications2021

Evolution of late-stage metastatic melanoma is dominated by aneuploidy and whole genome doubling.

Ismael A Vergara, Christopher P Mintoff, Shahneen Sandhu, Lachlan McIntosh, Richard J Young, Stephen Q Wong, Andrew Colebatch, Daniel L Cameron, Julia Lai Kwon, Rory Wolfe and 31 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 2 pooled it
5.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 2 syntheses or guidelines pooled it, 74 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 10 institutions in 3 countries.

Ismael A VergaraBioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.ORCID 0000-0002-2960-2967
Christopher P MintoffPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Shahneen SandhuPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Lachlan McIntoshBioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.
Richard J YoungPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Stephen Q WongPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Andrew ColebatchPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Daniel L CameronBioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia.ORCID 0000-0002-0951-7116
Julia Lai KwonPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Rory WolfeSchool of Public Health and Preventive Medicine, Monash University, Melbourne, Australia.ORCID 0000-0002-2126-1045
Angela PengPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Jason EllulPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0002-6046-5139
Xuelin DouPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Clare FedelePeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Samantha BoylePeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Gisela Mir ArnauPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0002-9005-3485
Jeanette RaleighPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Athena HatzimihalisPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0001-5084-7662
Pacman SzetoPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0002-6159-9913
Jennifer MooiPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Daniel S WidmerDepartment of Dermatology, University of Zürich Hospital, Zürich, Switzerland.
Phil F ChengDepartment of Dermatology, University of Zürich Hospital, Zürich, Switzerland.ORCID 0000-0003-2940-006X
Valerie AmannDepartment of Dermatology, University of Zürich Hospital, Zürich, Switzerland.
Reinhard DummerDepartment of Dermatology, University of Zürich Hospital, Zürich, Switzerland.ORCID 0000-0002-2279-6906
Nicholas HaywardMelanoma Institute of Australia, Sydney, Australia.ORCID 0000-0003-4760-1033
James WilmottMelanoma Institute of Australia, Sydney, Australia.ORCID 0000-0002-6750-5244
Richard A ScolyerMelanoma Institute of Australia, Sydney, Australia.ORCID 0000-0002-8991-0013
Raymond J ChoDepartment of Dermatology, University of California, San Francisco, CA, USA.
David BowtellPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Heather ThornePeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Kathryn AlsopPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Stephen CordnerThe Victorian Institute of Forensic Medicine, Melbourne, Australia.
Noel WoodfordThe Victorian Institute of Forensic Medicine, Melbourne, Australia.
Jodie LeditschkeThe Victorian Institute of Forensic Medicine, Melbourne, Australia.
Patricia O'BrienThe Victorian Institute of Forensic Medicine, Melbourne, Australia.
Sarah-Jane DawsonPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.ORCID 0000-0002-8276-0374
Grant A McArthurPeter MacCallum Cancer Centre, Melbourne, VIC, Australia.
Graham J MannMelanoma Institute of Australia, Sydney, Australia.ORCID 0000-0003-1301-405X
Mitchell P LevesqueDepartment of Dermatology, University of Zürich Hospital, Zürich, Switzerland.
Anthony T Papenfuss *Bioinformatics Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia. papenfuss@wehi.edu.au.ORCID 0000-0002-1102-8506
Mark Shackleton *Peter MacCallum Cancer Centre, Melbourne, VIC, Australia. mark.shackleton@monash.edu.ORCID 0000-0002-7673-4655
Peter MacCallum Cancer Centre · AUThe University of Melbourne · AUUniversity of Zurich · CHVictorian Institute of Forensic Medicine · AUMelanoma Institute Australia · AUMonash University · AUQIMR Berghofer Medical Research Institute · AUThe University of Sydney · AUUniversity of California, San Francisco · USWalter and Eliza Hall Institute of Medical Research · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although melanoma is initiated by acquisition of point mutations and limited focal copy number alterations in melanocytes-of-origin, the nature of genetic changes that characterise lethal metastatic disease is poorly understood. Here, we analyze the evolution of human melanoma progressing from early to late disease in 13 patients by sampling their tumours at multiple sites and times. Whole exome and genome sequencing data from 88 tumour samples reveals only limited gain of point mutations generally, with net mutational loss in some metastases. In contrast, melanoma evolution is dominated by whole genome doubling and large-scale aneuploidy, in which widespread loss of heterozygosity sculpts the burden of point mutations, neoantigens and structural variants even in treatment-naïve and primary cutaneous melanomas in some patients. These results imply that dysregulation of genomic integrity is a key driver of selective clonal advantage during melanoma progression.

Indexed as

AneuploidyCutaneous Malignant MelanomaDisease ProgressionDNA Copy Number VariationsExomeExome SequencingGenome, HumanHumansINDEL MutationMelanocytesMelanomaPoint MutationPolymorphism, Single NucleotideSkin NeoplasmsWhole Genome Sequencing

Identifiers

PMID33664264
PMCPMC7933255
OpenAlexW3134688004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.