Evidence map›Paper›PMID 33662627›Full record

ArticleGenomics, proteomics & bioinformatics2021

Trilineage Sequencing Reveals Complex TCRβ Transcriptomes in Neutrophils and Monocytes Alongside T Cells.

Tina Fuchs, Kerstin Puellmann, Chunlin Wang, Jian Han, Alexander W Beham, Michael Neumaier, Wolfgang E Kaminski

Open access · goldAbstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Tina FuchsInstitute for Clinical Chemistry, University of Heidelberg Medical Faculty Mannheim, D-68167 Mannheim, Germany. Electronic address: wolfgang.kaminski@ingeniumdx.com.
Kerstin PuellmannAesculabor Hamburg, D-22769 Hamburg, Germany.
Chunlin WangiRepertoire Inc., Huntsville, AL 35806, USA.
Jian HaniRepertoire Inc., Huntsville, AL 35806, USA; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Alexander W BehamDepartment of Surgery, Hospital of Siegen, D-57076 Siegen, Germany.
Michael NeumaierInstitute for Clinical Chemistry, University of Heidelberg Medical Faculty Mannheim, D-68167 Mannheim, Germany.
Wolfgang E KaminskiInstitute for Clinical Chemistry, University of Heidelberg Medical Faculty Mannheim, D-68167 Mannheim, Germany; Ingenium Digital Diagnostics, D-87662 Kaltental, Germany. Electronic address: tina.fuchs@medma.uni-heidelberg.de.
Heidelberg University · DEiRepertoire (United States) · USUniversity of Siegen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent findings indicate the presence of T cell receptor (TCR)-based combinatorial immune receptors beyond T cells in neutrophils and monocytes/macrophages. In this study, using a semiquantitative trilineage immune repertoire sequencing approach as well as under rigorous bioinformatic conditions, we identify highly complex TCRβ transcriptomes in human circulating monocytes and neutrophils that separately encode repertoire diversities one and two orders of magnitude smaller than that of T cells. Intraindividual transcriptomic analyses reveal that neutrophils, monocytes, and T cells express distinct TCRβ repertoires with less than 0.1% overall trilineage repertoire sharing. Interindividual comparison shows that in all three leukocyte lineages, the vast majority of the expressed TCRβ variants are private. We also find that differentiation of monocytes into macrophages induces dramatic individual-specific repertoire shifts, revealing a surprising degree of immune repertoire plasticity in the monocyte lineage. These results uncover the remarkable complexity of the two phagocyte-based flexible immune systems which until now has been hidden in the shadow of T cells.

Indexed as

Receptors, Antigen, T-Cell, alpha-betaT-LymphocytesHumansMonocytesNeutrophilsTranscriptomeReceptors, Antigen, T-Cell, alpha-betaMonocyteNeutrophilNext-generation sequencingT cellTCRβ transcriptome

Identifiers

PMID33662627
PMCPMC9402791
OpenAlexW3134371038

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.