Evidence map›Paper›PMID 33661917›Full record

Trial reportPloS one2021

Multi-omic analysis of stroke recurrence in African Americans from the Vitamin Intervention for Stroke Prevention (VISP) clinical trial.

Nicole M Davis Armstrong, Kelsey J Spragley, Wei-Min Chen, Fang-Chi Hsu, Michael S Brewer, Patrick J Horn, Stephen R Williams, Michèle M Sale, Bradford B Worrall, Keith L Keene

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. Epigenetics as a target to mitigate excess stroke risk in people of African ancestry: A scoping review.Journal of stroke and cerebrovascular diseases : the official journal of National Stroke Association · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Nicole M Davis ArmstrongDepartment of Biology, East Carolina University, Greenville, North Carolina, United States of America.
Kelsey J SpragleyDepartment of Biology, East Carolina University, Greenville, North Carolina, United States of America.
Wei-Min ChenCenter for Public Health Genomics, University of Virginia, Charlottesville, Virginia, United States of America.
Fang-Chi HsuDivision of Public Health Sciences, Department of Biostatistics and Data Science, Wake Forest School of Medicine, Winston-Salem, North Carolina, United States of America.
Michael S BrewerDepartment of Biology, East Carolina University, Greenville, North Carolina, United States of America.
Patrick J HornDepartment of Biology, East Carolina University, Greenville, North Carolina, United States of America.
Stephen R WilliamsDepartment of Neurology, University of Virginia, Charlottesville, Virginia, United States of America.
Michèle M SaleCenter for Public Health Genomics, University of Virginia, Charlottesville, Virginia, United States of America.
Bradford B WorrallDepartment of Public Health Sciences, University of Virginia, Charlottesville, Virginia, United States of America.
Keith L KeeneDepartment of Biology, East Carolina University, Greenville, North Carolina, United States of America.
East Carolina University · USUniversity of Virginia · USWake Forest University · US

Funding

Vitamin Intervention for Stroke Prevention (VISP)R01NS034447 · NINDS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI TOOLE, JAMES F · 1996 to 2006
$18.0M
Pharmacogenomic studies in VISP: results & implications for clinical trial designU01HG005160 · NHGRI · UNIVERSITY OF VIRGINIA · PI SALE, MICHELE M, WORRALL, BRADFORD B · 2009 to 2011
$1.9M
Genetic evaluation of two novel loci associated with recurrent strokeR15NS095115 · NINDS · EAST CAROLINA UNIVERSITY · PI BREWER, MICHAEL SCOTT, KEENE, KEITH L · 2016 to 2018
$476k
NHGRI NIH HHS U01 HG005160NINDS NIH HHS R01 NS034447NINDS NIH HHS R15 NS095115
6 · The paper itself

Abstract

African Americans endure a nearly two-fold greater risk of suffering a stroke and are 2-3 times more likely to die from stroke compared to those of European ancestry. African Americans also have a greater risk of recurrent stroke and vascular events, which are deadlier and more disabling than incident stroke. Stroke is a multifactorial disease with both heritable and environmental risk factors. We conducted an integrative, multi-omic study on 922 plasma metabolites, 473,864 DNA methylation loci, and 556 variants from 50 African American participants of the Vitamin Intervention for Stroke Prevention clinical trial to help elucidate biomarkers contributing to recurrent stroke rates in this high risk population. Sixteen metabolites, including cotinine, N-delta-acetylornithine, and sphingomyelin (d17:1/24:1) were identified in t-tests of recurrent stroke outcome or baseline smoking status. Serum tricosanoyl sphingomyelin (d18:1/23:0) levels were significantly associated with recurrent stroke after adjusting for covariates in Cox Proportional Hazards models. Weighted Gene Co-expression Network Analysis identified moderate correlations between sphingolipid markers and clinical traits including days to recurrent stroke. Integrative analyses between genetic variants in sphingolipid pathway genes identified 29 nominal associations with metabolite levels in a one-way analysis of variance, while epigenomic analyses identified xenobiotics, predominately smoking-associated metabolites and pharmaceutical drugs, associated with methylation profiles. Taken together, our results suggest that metabolites, specifically those associated with sphingolipid metabolism, are potential plasma biomarkers for stroke recurrence in African Americans. Furthermore, genetic variation and DNA methylation may play a role in the regulation of these metabolites.

Indexed as

Genetic LociGenetic VariationMetabolomicsStrokeAgedBlack or African AmericanDNA MethylationFemaleHumansMaleMiddle AgedVitaminsVitamins

Identifiers

PMID33661917
PMCPMC7932724
OpenAlexW3135815659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.