Evidence map›Paper›PMID 33660769›Full record

ArticleNucleic acids research2021

RNA thermoswitches modulate Staphylococcus aureus adaptation to ambient temperatures.

Arancha Catalan-Moreno, Marta Cela, Pilar Menendez-Gil, Naiara Irurzun, Carlos J Caballero, Isabelle Caldelari, Alejandro Toledo-Arana

Abstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Multilayer Regulation ofMicroorganisms · 2022
    Article
  8. Comparative Transcriptomic Analysis ofFoods (Basel, Switzerland) · 2022
    Article
  9. Regulation of Heterogenous LexA Expression inInternational journal of molecular sciences · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Microorganisms · 2021
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Arancha Catalan-MorenoInstituto de Agrobiotecnología, IdAB, CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Navarra, Spain.
Marta CelaInstituto de Agrobiotecnología, IdAB, CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Navarra, Spain.
Pilar Menendez-GilInstituto de Agrobiotecnología, IdAB, CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Navarra, Spain.
Naiara IrurzunInstituto de Agrobiotecnología, IdAB, CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Navarra, Spain.
Carlos J CaballeroInstituto de Agrobiotecnología, IdAB, CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Navarra, Spain.
Isabelle CaldelariArchitecture et Réactivité de l'ARN, Université de Strasbourg, CNRS, UPR 9002, F-67000 Strasbourg, France.
Alejandro Toledo-AranaInstituto de Agrobiotecnología, IdAB, CSIC-Gobierno de Navarra, Avda. de Pamplona 123, 31192 Mutilva, Navarra, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermoregulation of virulence genes in bacterial pathogens is essential for environment-to-host transition. However, the mechanisms governing cold adaptation when outside the host remain poorly understood. Here, we found that the production of cold shock proteins CspB and CspC from Staphylococcus aureus is controlled by two paralogous RNA thermoswitches. Through in silico prediction, enzymatic probing and site-directed mutagenesis, we demonstrated that cspB and cspC 5'UTRs adopt alternative RNA structures that shift from one another upon temperature shifts. The open (O) conformation that facilitates mRNA translation is favoured at ambient temperatures (22°C). Conversely, the alternative locked (L) conformation, where the ribosome binding site (RBS) is sequestered in a double-stranded RNA structure, is folded at host-related temperatures (37°C). These structural rearrangements depend on a long RNA hairpin found in the O conformation that sequesters the anti-RBS sequence. Notably, the remaining S. aureus CSP, CspA, may interact with a UUUGUUU motif located in the loop of this long hairpin and favour the folding of the L conformation. This folding represses CspB and CspC production at 37°C. Simultaneous deletion of the cspB/cspC genes or their RNA thermoswitches significantly decreases S. aureus growth rate at ambient temperatures, highlighting the importance of CspB/CspC thermoregulation when S. aureus transitions from the host to the environment.

Indexed as

5' Untranslated RegionsGene Expression Regulation, BacterialTemperatureAdaptation, PhysiologicalBacterial ProteinsHeat-Shock ProteinsMutationNucleic Acid ConformationStaphylococcus aureus5' Untranslated RegionsBacterial Proteinscold shock protein CS7.4, Bacteriacold-shock protein CspB, BacteriaCspC protein, bacteriaHeat-Shock Proteins

Identifiers

PMID33660769
PMCPMC8034633

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.