Evidence map›Paper›PMID 33660145›Full record

ArticleJournal of mathematical biology2021

Spots, stripes, and spiral waves in models for static and motile cells : GTPase patterns in cells.

Yue Liu, Elisabeth G Rens, Leah Edelstein-Keshet

Open access · hybridAbstract read
In one paragraph

Article in Journal of mathematical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  6. Dynamic regulation of RAS and RAS signaling.The Biochemical journal · 2023
    Article
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  9. Modern perspectives on near-equilibrium analysis of Turing systems.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 4 countries.

Yue LiuDepartment of Mathematics, University of British Columbia, Vancouver, V6T 1Z2, BC, Canada. yue.liu@maths.ox.ac.uk.ORCID 0000-0001-8661-3294
Elisabeth G RensDepartment of Mathematics, University of British Columbia, Vancouver, V6T 1Z2, BC, Canada.
Leah Edelstein-KeshetDepartment of Mathematics, University of British Columbia, Vancouver, V6T 1Z2, BC, Canada.
University of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The polarization and motility of eukaryotic cells depends on assembly and contraction of the actin cytoskeleton and its regulation by proteins called GTPases. The activity of GTPases causes assembly of filamentous actin (by GTPases Cdc42, Rac), resulting in protrusion of the cell edge. Mathematical models for GTPase dynamics address the spontaneous formation of patterns and nonuniform spatial distributions of such proteins in the cell. Here we revisit the wave-pinning model for GTPase-induced cell polarization, together with a number of extensions proposed in the literature. These include introduction of sources and sinks of active and inactive GTPase (by the group of A. Champneys), and negative feedback from F-actin to GTPase activity. We discuss these extensions singly and in combination, in 1D, and 2D static domains. We then show how the patterns that form (spots, waves, and spirals) interact with cell boundaries to create a variety of interesting and dynamic cell shapes and motion.

Indexed as

Cell MovementEukaryotic CellsGTP PhosphohydrolasesActin CytoskeletonCell ShapeGTP PhosphohydrolasesGTPaseIntracellular signalingLocal perturbation analysisPattern formationStatic and moving boundary computationwave-pinning

Identifiers

PMID33660145
PMCPMC7929972
OpenAlexW3134083665

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.