Evidence map›Paper›PMID 33659408›Full record

ArticleBio-protocol2020

Screening Method for CRISPR/Cas9 Inhibition of a Human DNA Virus: Herpes Simplex Virus.

Werner M Neuhausser, Hyung S Oh, Pierce Eggan, Magdalena Angelova, Rory Kirchner, Kevin C Eggan, David M Knipe

Open access · hybridAbstract read
In one paragraph

Article in Bio-protocol, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Werner M NeuhausserDepartment of Obstetrics and Gynecology, Division of Reproductive Endocrinology and Infertility, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, USA.
Hyung S OhDepartment of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, USA.
Pierce EgganDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, USA.
Magdalena AngelovaDepartment of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, USA.
Rory KirchnerDepartment of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, USA.
Kevin C EgganDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, USA.
David M KnipeDepartment of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, USA.
Harvard University · USHarvard Stem Cell Institute · US

Funding

Nuclear Sensing of Herpesviral DNAR01AI106934 · NIAID · HARVARD MEDICAL SCHOOL · PI KNIPE, DAVID M. · 2014 to 2021
$3.8M
Nuclear Sensing of Herpesviral DNAR56AI106934 · NIAID · HARVARD MEDICAL SCHOOL · PI KNIPE, DAVID M. · 2024 to 2024
$587k
CRISPR/Cas9 based antivirals for treatment of latent and lytic Herpesvirus-1 and -2 infection in vivoR21AI135423 · NIAID · HARVARD UNIVERSITY · PI EGGAN, KEVIN C · 2018 to 2019
$465k
NIAID NIH HHS R01 AI106934NIAID NIH HHS R21 AI135423NIAID NIH HHS R56 AI106934
6 · The paper itself

Abstract

The efficiency of cleavage of individual CRISPR/Cas9-sgRNAs remains difficult to predict based on the CRISPR target sequence alone. Different intracellular environments (dependent on cell type or cell cycle state for example) may affect sgRNA efficiency by altering accessibility of genomic DNA through DNA modifications such as epigenetic marks and DNA-binding proteins (

Indexed as

CRISPRCRISPR/Cas9Herpes simplex virusHerpesviridaeHSVHSV encephalitisHSV keratitisRecurrent genital herpes

Identifiers

PMID33659408
PMCPMC7842287
OpenAlexW3083519119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.