Evidence map›Paper›PMID 33658498›Full record

ArticleNature communications2021

Somatic mutations and single-cell transcriptomes reveal the root of malignant rhabdoid tumours.

Lars Custers, Eleonora Khabirova, Tim H H Coorens, Thomas R W Oliver, Camilla Calandrini, Matthew D Young, Felipe A Vieira Braga, Peter Ellis, Lira Mamanova, Heidi Segers and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 84 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 4 countries.

Lars Custers *Princess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.ORCID 0000-0003-0252-7714
Eleonora Khabirova *Wellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK.ORCID 0000-0002-5891-6789
Tim H H Coorens *Wellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK.ORCID 0000-0002-5826-3554
Thomas R W OliverWellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK.ORCID 0000-0003-4306-0102
Camilla CalandriniPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.
Matthew D YoungWellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK.
Felipe A Vieira BragaAmsterdam UMC, University of Amsterdam, Amsterdam, the Netherlands.ORCID 0000-0003-0206-9258
Peter EllisWellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK.
Lira MamanovaWellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK.ORCID 0000-0003-1463-8622
Heidi SegersDepartment of Pediatric Hemato-Oncology, University Hospital Leuven, Leuven, Belgium.ORCID 0000-0002-3604-7850
Arie MaatPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.
Marcel KoolPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.
Eelco W HovingPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.ORCID 0000-0002-5587-0439
Marry M van den Heuvel-EibrinkPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.ORCID 0000-0002-7760-879X
James NicholsonCambridge University Hospitals NHS Foundation Trust, Cambridge, CB2 0QQ, UK.
Karin StraathofUCL Great Ormond Street Hospital Institute of Child Health Biomedical Research Centre, London, WC1N 1EH, UK.ORCID 0000-0001-9673-8568
Liz HookCambridge University Hospitals NHS Foundation Trust, Cambridge, CB2 0QQ, UK.
Ronald R de KrijgerPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands.
Claire TrayersCambridge University Hospitals NHS Foundation Trust, Cambridge, CB2 0QQ, UK.ORCID 0000-0003-0236-6041
Kieren AllinsonCambridge University Hospitals NHS Foundation Trust, Cambridge, CB2 0QQ, UK.
Sam BehjatiWellcome Sanger Institute, Hinxton, Saffron Walden, CB10 1SA, UK. sb31@sanger.ac.uk.ORCID 0000-0002-6600-7665
Jarno DrostPrincess Máxima Center for Pediatric Oncology, 3584CS, Utrecht, the Netherlands. J.Drost@prinsesmaximacentrum.nl.ORCID 0000-0002-2941-6179
Wellcome Sanger Institute · GBUniversity of Cambridge · GBOncode Institute · NLPrincess Máxima Center · NLCambridge University Hospitals NHS Foundation Trust · GBAmsterdam University Medical Centers · NLGerman Cancer Research Center · DEGreat Ormond Street Hospital · GBKU Leuven · BEUniversity Medical Center Utrecht · NL

Funding

Cancer Research UKWellcome Trust
6 · The paper itself

Abstract

Malignant rhabdoid tumour (MRT) is an often lethal childhood cancer that, like many paediatric tumours, is thought to arise from aberrant fetal development. The embryonic root and differentiation pathways underpinning MRT are not firmly established. Here, we study the origin of MRT by combining phylogenetic analyses and single-cell mRNA studies in patient-derived organoids. Comparison of somatic mutations shared between cancer and surrounding normal tissues places MRT in a lineage with neural crest-derived Schwann cells. Single-cell mRNA readouts of MRT differentiation, which we examine by reverting the genetic driver mutation underpinning MRT, SMARCB1 loss, suggest that cells are blocked en route to differentiating into mesenchyme. Quantitative transcriptional predictions indicate that combined HDAC and mTOR inhibition mimic MRT differentiation, which we confirm experimentally. Our study defines the developmental block of MRT and reveals potential differentiation therapies.

Indexed as

MutationCell DifferentiationDNA MethylationDrug Screening Assays, AntitumorGene Expression ProfilingGene Expression Regulation, NeoplasticHistone Deacetylase InhibitorsHumansNeural CrestPhylogenyRhabdoid TumorSingle-Cell AnalysisSMARCB1 ProteinTissue Culture TechniquesTOR Serine-Threonine KinasesHistone Deacetylase InhibitorsMTOR protein, humanSMARCB1 ProteinSMARCB1 protein, humanTOR Serine-Threonine Kinases

Identifiers

PMID33658498
PMCPMC7930245
OpenAlexW3135855411

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.