Evidence map›Paper›PMID 33658493›Full record

ArticleNature communications2021

pHmScarlet is a pH-sensitive red fluorescent protein to monitor exocytosis docking and fusion steps.

Anyuan Liu, Xiaoshuai Huang, Wenting He, Fudong Xue, Yanrui Yang, Jiajia Liu, Liangyi Chen, Lin Yuan, Pingyong Xu

Abstract readVideo-Audio Media
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Anyuan Liu *School of Life Sciences, University of Science and Technology of China, Hefei, Anhui, China.ORCID 0000-0003-4356-1441
Xiaoshuai Huang *Biomedical Engineering Department, Peking University, Beijing, China.ORCID 0000-0001-9582-0965
Wenting HeKey Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Fudong XueKey Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Yanrui YangState Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Beijing, China.
Jiajia LiuState Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Beijing, China.ORCID 0000-0002-6099-1059
Liangyi ChenState Key Laboratory of Membrane Biology, Beijing Key Laboratory of Cardiometabolic Molecular Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.ORCID 0000-0003-1270-7321
Lin YuanKey Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China. yuanlin@ibp.ac.cn.ORCID 0000-0003-1197-8867
Pingyong XuSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui, China. pyxu@ibp.ac.cn.ORCID 0000-0002-8779-6931

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

pH-sensitive fluorescent proteins (FPs) are highly advantageous for the non-invasive monitoring of exocytosis events. Superecliptic pHluorin (SEP), a green pH-sensitive FP, has been widely used for imaging single-vesicle exocytosis. However, the docking step cannot be visualized using this FP, since the fluorescence signal inside vesicles is too low to be observed during docking process. Among the available red pH-sensitive FPs, none is comparable to SEP for practical applications due to unoptimized pH-sensitivity and fluorescence brightness or severe photochromic behavior. In this study, we engineer a bright and photostable red pH-sensitive FP, named pHmScarlet, which compared to other red FPs has higher pH sensitivity and enables the simultaneous detection of vesicle docking and fusion. pHmScarlet can also be combined with SEP for dual-color imaging of two individual secretory events. Furthermore, although the emission wavelength of pHmScarlet is red-shifted compared to that of SEP, its spatial resolution is high enough to show the ring structure of vesicle fusion pores using Hessian structured illumination microscopy (Hessian-SIM).

Indexed as

AnimalsCell LineExocytosisGreen Fluorescent ProteinsHippocampusHumansHydrogen-Ion ConcentrationLuminescent ProteinsMutationNeuronsRatsRats, Sprague-DawleyRecombinant ProteinsRed Fluorescent ProteinSynaptic VesiclesTime-Lapse ImagingGreen Fluorescent ProteinsLuminescent ProteinsRecombinant ProteinsRed Fluorescent ProteinVAMP2 protein, humanVesicle-Associated Membrane Protein 2

Identifiers

PMID33658493
PMCPMC7930027

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.