Evidence map›Paper›PMID 33658079›Full record

ArticleVeterinary research2021

Exosomal miRNA profiling from H5N1 avian influenza virus-infected chickens.

Yeojin Hong, Anh Duc Truong, Jiae Lee, Thi Hao Vu, Sooyeon Lee, Ki-Duk Song, Hyun S Lillehoj, Yeong Ho Hong

Open access · goldAbstract read
In one paragraph

Article in Veterinary research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Yeojin HongDepartment of Animal Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Anh Duc TruongDepartment of Biochemistry and Immunology, National Institute of Veterinary Research, 86 Truong Chinh, Dong Da, Hanoi, 100000, Vietnam.
Jiae LeeDepartment of Animal Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Thi Hao VuDepartment of Animal Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Sooyeon LeeDepartment of Animal Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea.
Ki-Duk SongDepartment of Animal Biotechnology, College of Agricultural and Life Sciences, Jeonbuk National University, Jeonju, 54896, Republic of Korea.
Hyun S LillehojAnimal Biosciences and Biotechnology Laboratory, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, 20705, USA.
Yeong Ho HongDepartment of Animal Science and Technology, Chung-Ang University, Anseong, 17546, Republic of Korea. yhong@cau.ac.kr.ORCID http://orcid.org/0000-0002-4510-7851
Chung-Ang University · KRAgricultural Research Service · USNational Institute of Veterinary Research · VN

Funding

National Foundation for Science and Technology Development 106.02-2019.01National Institute of Food and Agriculture 2017-6701526793National Research Foundation grant NRF-2021R1A2C2005236
6 · The paper itself

Abstract

Exosomes are membrane vesicles containing proteins, lipids, DNA, mRNA, and micro RNA (miRNA). Exosomal miRNA from donor cells can regulate the gene expression of recipient cells. Here, Ri chickens were divided into resistant (Mx/A; BF2/B21) and susceptible (Mx/G; BF2/B13) trait by genotyping of Mx and BF2 genes. Then, Ri chickens were infected with H5N1, a highly pathogenic avian influenza virus (HPAIV). Exosomes were purified from blood serum of resistant chickens for small RNA sequencing. Sequencing data were analysed using FastQCv0.11.7, Cutadapt 1.16, miRBase v21, non-coding RNA database, RNAcentral 10.0, and miRDeep2. Differentially expressed miRNAs were determined using statistical methods, including fold-change, exactTest using edgeR, and hierarchical clustering. Target genes were predicted using miRDB. Gene ontology analysis was performed using gProfiler. Twenty miRNAs showed significantly different expression patterns between resistant control and infected chickens. Nine miRNAs were up-regulated and 11 miRNAs were down-regulated in the infected chickens compared with that in the control chickens. In target gene analysis, various immune-related genes, such as cytokines, chemokines, and signalling molecules, were detected. In particular, mitogen-activated protein kinase (MAPK) pathway molecules were highly controlled by differentially expressed miRNAs. The result of qRT-PCR for miRNAs was identical with sequencing data and miRNA expression level was higher in resistant than susceptible chickens. This study will help to better understand the host immune response, particularly exosomal miRNA expression against HPAIV H5N1 and could help to determine biomarkers for disease resistance.

Indexed as

ChickensAnimalsExosomesInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsMicroRNAsPoultry DiseasesMicroRNAsExosomesH5N1HPAIVmiRNASmall RNA sequencing

Identifiers

PMID33658079
PMCPMC7931527
OpenAlexW3134126511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.